PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022350.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 446aa    MW: 48323.2 Da    PI: 8.0322
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022350.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH32.31.7e-105275326
                 S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH  3 telCrffartGtCkyGdrCkFaHg 26
                  + C +++rtG C yG++C+++H+
  CCG022350.1 52 APDCGYYLRTGLCGYGSNCRYNHP 75
                 589********************9 PP
2zf-CCCH36.58.4e-1294118327
                  S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                  ++ C ++++tGtCkyG++Ck++H++
  CCG022350.1  94 QPDCGYYLKTGTCKYGSTCKYHHPR 118
                  789********************96 PP
3zf-CCCH34.82.7e-11140163427
                  ---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   4 elCrffartGtCkyGdrCkFaHgp 27 
                  + C++++rt  Ck+G  CkF+H++
  CCG022350.1 140 KSCPYYMRTRSCKFGVACKFHHPQ 163
                  66********************97 PP
4zf-CCCH35.91.3e-11287313127
                  --S---SGGGGTS--TTTTT-SS-SSS CS
      zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                  +++++Cr+f+ tGtCkyG+ Ck++H++
  CCG022350.1 287 PGQPECRHFMSTGTCKYGSDCKYHHPK 313
                  5789*********************96 PP
5zf-CCCH31.33.4e-10334358226
                  -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                  +++ C++++ +G+Ck+G++C++ H+
  CCG022350.1 334 GQAMCPDYSMYGICKFGPTCRYDHP 358
                  7899********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003564.9E-64976IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.0654977IPR000571Zinc finger, CCCH-type
PfamPF006423.0E-85275IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-55476IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.100.0015574IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.64391119IPR000571Zinc finger, CCCH-type
SMARTSM003561.8E-591118IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-994118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.01E-695119IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.7E-497118IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.19E-5135164IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.962136164IPR000571Zinc finger, CCCH-type
SMARTSM003560.029138163IPR000571Zinc finger, CCCH-type
PfamPF006424.4E-9139163IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.5E-4141162IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.53286314IPR000571Zinc finger, CCCH-type
SMARTSM003561.6E-6286313IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-9288313IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-7290315IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-6292313IPR000571Zinc finger, CCCH-type
SMARTSM003561.3E-5332359IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.577332360IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-5334361IPR000571Zinc finger, CCCH-type
PfamPF006421.3E-6338358IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MPDHNNRQVK SNAVSNQSAD NIEEAIWRLK IHDHQEQGGM AQSSPYPDRP GAPDCGYYLR  60
TGLCGYGSNC RYNHPVCAAL GTQLREELPE RVGQPDCGYY LKTGTCKYGS TCKYHHPRDR  120
NGAGPVSFNV LGLPMRQDEK SCPYYMRTRS CKFGVACKFH HPQPASLGTS FSLTGAAAFG  180
PTGSPLVPSS GLPYVGGLPT WSLTRPPLMS GTNLQGPQAY MPVVVSPPPG IVPVPGWNTY  240
VGNLNPMSSS SILGSNRAYD SRNQGDSGSG GQVHMLSTVS PILPERPGQP ECRHFMSTGT  300
CKYGSDCKYH HPKERIAQLA TNTMGLLGLP SRPGQAMCPD YSMYGICKFG PTCRYDHPLH  360
TYPYNYSLSL PSLSIMDSSL ITYPRMAQAA PVTLSKLPDL IHNPDGASYN KHQNPDTSTK  420
ISDDPTEQAG SPPPHSSQAS SEPSHD
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007757.10.0PREDICTED: zinc finger CCCH domain-containing protein 3
SwissprotQ94AD91e-111C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLB9IAL10.0B9IAL1_POPTR; Uncharacterized protein
STRINGPOPTR_0014s15770.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF80303346
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.21e-106C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]