PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022336.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WOX
Protein Properties Length: 259aa    MW: 28877.5 Da    PI: 6.9308
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022336.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox60.62.4e-192787357
                 --SS--HHHHHHHHHHHHH..SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox  3 kRttftkeqleeLeelFek..nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57
                 +R+++t++q+++L+el++    r p+ +e+++++++l    +++ ++V++WFqN++a+e++
  CCG022336.1 27 TRWNPTTDQIRILKELYYIkgVRSPNGAEIQQISARLrkygKIEGKNVFYWFQNHKARERQ 87
                 8****************95469*************************************97 PP
2Wus_type_Homeobox1116.5e-362589265
  Wus_type_Homeobox  2 artRWtPtpeQikiLeelyk.sGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65
                       ++tRW+Pt++Qi+iL+ely+ +G+r+Pn +eiq+i+a+L++yGkie+kNVfyWFQN+kaRerqk+
        CCG022336.1 25 TSTRWNPTTDQIRILKELYYiKGVRSPNGAEIQQISARLRKYGKIEGKNVFYWFQNHKARERQKK 89
                       789****************99******************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466894.28E-111992IPR009057Homeodomain-like
PROSITE profilePS500719.9612288IPR001356Homeobox domain
SMARTSM003891.1E-42492IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.602.0E-62787IPR009057Homeodomain-like
PfamPF000467.8E-172787IPR001356Homeobox domain
CDDcd000865.11E-62789No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MEPHQQQPNE DNNSGAKGSF LCRQTSTRWN PTTDQIRILK ELYYIKGVRS PNGAEIQQIS  60
ARLRKYGKIE GKNVFYWFQN HKARERQKKR LTNEVPMQQR TAWKPEDYYS YKYSNRFSSA  120
SSSVNTGVVT VGQADNHGYG SVTMQEKNSW DCSAPAGGSN GAGSGSMSNI NYGSGVDINP  180
HSSSYAVFGQ EQEAAAKIET LPLFPMLGED ISSSFDINNT NPDFYYSSGC GYGDYGNDTT  240
ARTSLDLSLY SYNGQPQDY
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that plays a central role during developmental processes such as early embryogenesis and flowering, probably by regulating expression of specific genes. Required to specify stem cell identity in meristems, such as shoot apical meristem (SAM). Acts in parallel with HAM. {ECO:0000269|PubMed:12208843}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAM2347470.0AM234747.1 Populus trichocarpa mRNA for WUS protein.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025959.10.0PREDICTED: protein WUSCHEL-like
SwissprotQ8LL116e-58WUS_PETHY; Protein WUSCHEL
TrEMBLG8XRM01e-180G8XRM0_POPTO; Wuschel 2
STRINGPOPTR_0007s14130.11e-173(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF82413345
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G17950.12e-35WOX family protein
Publications ? help Back to Top
  1. Stuurman J,Jäggi F,Kuhlemeier C
    Shoot meristem maintenance is controlled by a GRAS-gene mediated signal from differentiating cells.
    Genes Dev., 2002. 16(17): p. 2213-8
    [PMID:12208843]