PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG022328.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

C3H

Protein Properties

Length: 653aa MW: 72276.1 Da PI: 8.9371

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG022328.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.7	3e-06	599	622	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++C++f C+ G+ C+F H+ CCG022328.1 599 QKPCMYFKTPKGCRNGSDCPFQHD 622 789********************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50103	13.31	596	624	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 653 aa Download sequence Send to blast
MGRQTCGPEE RSADQHAPAT TMEADGEKET REELWGAILE LYEKLPQRIK NQLTLEKFDV 60 HRDVSRDFQV YSSSRRSEGS TVGKLSRKLE RFKNQLNLEK FDVHGDVSRD LKVRLFLSED 120 CPSEVGGQVQ DLLQKNASQL LPISSRKDSN DLPPGFERTH FLNPYIKELS CIPRVQWKCP 180 PNFVVNYNWR VTDGEESQES EAQKLREMRV LEAVYPRPSS VPPSPAVSLD VEEENYDDSL 240 TPIIPLIPVE EEEAAEMPAA LTEPLKNPTI SLSPASPPVL LSSGILNSSK SNTPALNPPA 300 SQKPELGRLP DPGTHPITGA SAAVTAIIKS KEQGGLIDTD LLAKIFSDPK MVDKLITGNQ 360 TLPVTSRPVS SSRSPLYAKP AMVSAPSPAN GNLQRLPSKE LPWSKPMGQI PIPCPKPAVH 420 FPSMPYDGSL HHQLSQVQTT VTRNSMLQDA VPATGLRVAS PIPVPIQEPG KVSAPRPPVG 480 NLFSASNSMQ TTPSLVPAES KTPQISYFKD IHPNPMFDSE KPTLVKKPKQ PISVPQGGKK 540 TNLVKDVSYI KNLIKEHGTA KKEMRDRNLF HNGSHYYNHT QNPESIQNSK NRELKPKFQK 600 PCMYFKTPKG CRNGSDCPFQ HDMSFQFQTG SSDSKLQVAK RMKFSGEITA GRT

Sequence ? help Back to Top

Protein Sequence Length: 653 aa Download sequence Send to blast

MGRQTCGPEE RSADQHAPAT TMEADGEKET REELWGAILE LYEKLPQRIK NQLTLEKFDV  60
HRDVSRDFQV YSSSRRSEGS TVGKLSRKLE RFKNQLNLEK FDVHGDVSRD LKVRLFLSED  120
CPSEVGGQVQ DLLQKNASQL LPISSRKDSN DLPPGFERTH FLNPYIKELS CIPRVQWKCP  180
PNFVVNYNWR VTDGEESQES EAQKLREMRV LEAVYPRPSS VPPSPAVSLD VEEENYDDSL  240
TPIIPLIPVE EEEAAEMPAA LTEPLKNPTI SLSPASPPVL LSSGILNSSK SNTPALNPPA  300
SQKPELGRLP DPGTHPITGA SAAVTAIIKS KEQGGLIDTD LLAKIFSDPK MVDKLITGNQ  360
TLPVTSRPVS SSRSPLYAKP AMVSAPSPAN GNLQRLPSKE LPWSKPMGQI PIPCPKPAVH  420
FPSMPYDGSL HHQLSQVQTT VTRNSMLQDA VPATGLRVAS PIPVPIQEPG KVSAPRPPVG  480
NLFSASNSMQ TTPSLVPAES KTPQISYFKD IHPNPMFDSE KPTLVKKPKQ PISVPQGGKK  540
TNLVKDVSYI KNLIKEHGTA KKEMRDRNLF HNGSHYYNHT QNPESIQNSK NRELKPKFQK  600
PCMYFKTPKG CRNGSDCPFQ HDMSFQFQTG SSDSKLQVAK RMKFSGEITA GRT

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC214417	0.0	AC214417.1 Populus trichocarpa clone POP037-E08, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011025937.1	0.0	PREDICTED: zinc finger CCCH domain-containing protein 6-like
TrEMBL	B9HFK4	0.0	B9HFK4_POPTR; Uncharacterized protein
STRING	POPTR_0007s13990.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8683	7	9