PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022310.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 1609aa    MW: 177024 Da    PI: 6.0024
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022310.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH18.63.4e-0615861609226
                   -S---SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH    2 ktelCrffartGtCkyGdrCkFaHg 26  
                   +++ C+ f+++G+Ck G++C+F H+
  CCG022310.1 1586 GQRVCK-FYESGYCKKGASCSFWHP 1609
                   6799**.8899***********997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF579033.32E-8101170IPR011011Zinc finger, FYVE/PHD-type
Gene3DG3DSA:3.30.40.105.4E-9113177IPR013083Zinc finger, RING/FYVE/PHD-type
SMARTSM002494.9E-7125171IPR001965Zinc finger, PHD-type
CDDcd155681.87E-19125170No hitNo description
PROSITE patternPS013590126186IPR019786Zinc finger, PHD-type, conserved site
SMARTSM001510.001354437IPR019835SWIB domain
Gene3DG3DSA:1.10.245.101.7E-24355438IPR003121SWIB/MDM2 domain
SuperFamilySSF475921.79E-20355433IPR003121SWIB/MDM2 domain
PfamPF022014.1E-14361432IPR003121SWIB/MDM2 domain
SMARTSM007197.8E-50496606IPR004343Plus-3 domain
PROSITE profilePS5136027.731496629IPR004343Plus-3 domain
SuperFamilySSF1590424.18E-33497627IPR004343Plus-3 domain
PfamPF031261.1E-22501604IPR004343Plus-3 domain
SuperFamilySSF552777.98E-15841896IPR003169GYF domain
PROSITE profilePS5082913.852844898IPR003169GYF domain
CDDcd000721.96E-14844901No hitNo description
SMARTSM004444.3E-15845900IPR003169GYF domain
Gene3DG3DSA:3.30.1490.406.3E-16846897IPR003169GYF domain
PfamPF022133.0E-11847895IPR003169GYF domain
SuperFamilySSF902294.87E-615841608IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.28615841609IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-415881608IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1609 aa     Download sequence    Send to blast
MRQQQEDYRP SVPDATEEEA PLAFDNSVPT SDPMSTDQCQ TIPEMEDSQL VGATVSMVTA  60
DVDSSRRESV HIVPAVEVSN HVRIAENSTG KRKRGRPPRT QGKLGPPQAP PASSSQRKKR  120
DEEDVCFICF DGGSLVLCDR RGCPKAYHPA CIKRDEAFFR SKAKWNCGWH ICSSCQKASH  180
YMCYTCPYSL CKGCTKDADY LCVRGNKGFC GTCMRTIMLI ENMATANQEK VQVDFDDTTS  240
WEYLFKVYWI YLKAKLSLTI DELTKAKNPW KGDDLTKVKS AWKGAGVMAP KQEPSGEFCH  300
SNDNNGSFSD SFCGNLEIHA KRRKMEDQRK LHIEEHSLVM EKSRIDQLTQ LPYSTLWATK  360
ELLDFVSHMK NGDMSALSQF DVQSLLLEYI KRNDLRDPHQ KSHIFCDSRL IKLFGKEHVG  420
HFEMLKLLEY HFLVKEKSPV DETTLMGVSN AGGGQVEAAG NSDSQLVTGS DRRRKTRKKM  480
DDRGPQINGN PEDYAAIDVH NIRLLYLKRS LMENLMDDAG KFHEKVVGSF VRIRISGGDQ  540
KQDMYRLVQV VGIGKAAASY KVGTKTTDDM LEILNLDKKE VISIDGISNQ DFSEGECKRL  600
RQSIKCGLIK RLTVGEIQKR AMAIQDAKVR DRLEEEILRL NHLRDRASEK GHGKEYPLLE  660
CVEKLELLKS PEERQRRLLE IPDVHADPNM NPSYDSEEDS GESHKKKQGD HARPRNSSAA  720
RNGAVLNSSM GGGDVLSDRG NMGQNLATAS EQGRDTYTTS YVDRDGTNVV HVRVSESMQT  780
QGGEQVPNSQ NAPKNWVAST GSMTDDWKSQ SIVQCGSYSG VVSPNLPPPL SIGREQLVDD  840
MEMDKLWHYQ DPTGKTQGPF AMADLRKWST RGLFPRGLRV WKINEKPDDS IPLTDALFGR  900
FHKGPALPDN SYLLAQEAIV ASDKDKRHEF DMHQSTDASL VDKKNMDHWK SVQNNASVNC  960
NDNDALLKSN ALSIHSSSWT TGADAIIPNN GPAQLALQLL ELSKGCKSWS DQSQICSSLS  1020
SLPTSGKIGE IPLPQAKEEH EDEKRSYDPS YVNGNSLKTP EGKNNIGKSE DKQADSESYS  1080
NQSSGQNWRP PIKSSSGWDS KPAFVSGDKS VETSQKNEEI DFFDLPSPTP KQHLKDLKGH  1140
TAENKHSISS KLPVLDSGCS WSTASSLVVG GATLARVAGE WGGYSPAPVK PVEEWDSNHV  1200
SASSLKPTDG GSDHASTQTP DSGPLTHSPS THPVIDASDW QPIIPEPTEF CSLVDESVSD  1260
LLAEVEAMES LGGLPSPTSK LQSAEELTRG YDDDCFSPVD EFNPAPDPGK SDAFSSTADI  1320
QIPSHLTVVS EALVPCHMPS EPTVMDKQLA VSPMPSQMTA VNESLGISCT PSQSTITDEP  1380
LERSQKPSQS TLIDEPLGLS QIDVPNPQKS FSEHSSTSPE VEGNTKPNDV PVNEWEKGSE  1440
IQPLAPLAGN QGESGADIQS TTPSTASQLE AGSNAQQPTP SHEDAGQGTT KEREAQGNTN  1500
MVWGNGHGTG QQHARTNGAN SAGNPGGWGS QPRYGGDRFS GPRDHRNNFQ GRDRDSGFGR  1560
DRSSWNKQPL HGGGNGASTY RPPPKGQRVC KFYESGYCKK GASCSFWHP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4gnd_A7e-141191921181Histone-lysine N-methyltransferase NSD3
4gnd_C7e-141191921181Histone-lysine N-methyltransferase NSD3
4gne_A7e-141191921181Histone-lysine N-methyltransferase NSD3
4gnf_A7e-141191921181Histone-lysine N-methyltransferase NSD3
4gng_A7e-141191921181Histone-lysine N-methyltransferase NSD3
4gng_D7e-141191921181Histone-lysine N-methyltransferase NSD3
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a central role in integrating RNA silencing and chromatin signals in 21 nt siRNA-dependent DNA methylation on cytosine pathway leading to transcriptional gene silencing of specific sequences. Involved in a chromatin-based RNA silencing pathway that encompasses both post-transcriptional gene silencing (PTGS) (e.g. RDR1, RDR6 and AGO2) and transcriptional gene silencing (TGS) (e.g. siRNA-dependent DNA methylation and histone H3) components. Mediates siRNA accumulation at specific chromatin loci. Binds H3K4me0 through its PHD to enforce low levels of H3K4 methylation and gene silencing at a subset of genomic loci. {ECO:0000269|PubMed:22940247}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025907.10.0PREDICTED: zinc finger CCCH domain-containing protein 44
SwissprotQ9SIV50.0C3H19_ARATH; Zinc finger CCCH domain-containing protein 19
TrEMBLA0A2K2AFG80.0A0A2K2AFG8_POPTR; Uncharacterized protein
STRINGPOPTR_0007s13760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14351523
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G16485.10.0nucleic acid binding;zinc ion binding;DNA binding