PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022300.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 227aa    MW: 26379 Da    PI: 9.9058
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022300.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF88.63.3e-28959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+ien +nrqvt+skRrngi+KKA+EL vLCda+v++i+fs+t+kl ey+s
  CCG022300.1  9 KKIENPTNRQVTYSKRRNGIFKKAQELTVLCDAKVSLIMFSNTNKLNEYIS 59
                 68***********************************************86 PP
2K-box82.59.2e-2871169199
        K-box   1 yqkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                  yq++ g +l+ +++e++q++l+kL++ +++L+ e+R++ Ge+L++Ls+ +L+ Leq++ ++l+ +R +K++++++q e+ +kk k+l+e++ +L +++
  CCG022300.1  71 YQNALGIDLWGTQYEKMQEQLRKLNDINHKLRIEIRQRRGEGLNDLSIDHLHGLEQHMTEALNGVRGRKYHVIKTQNETYRKKVKNLEERHGNLLMEY 168
                  78888999**************************************************************************************9887 PP

        K-box  99 e 99 
                  e
  CCG022300.1 169 E 169
                  6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006631.553161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-40160IPR002100Transcription factor, MADS-box
SuperFamilySSF554558.76E-37294IPR002100Transcription factor, MADS-box
CDDcd002652.07E-39280No hitNo description
PRINTSPR004045.1E-27323IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PfamPF003192.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004045.1E-273859IPR002100Transcription factor, MADS-box
PfamPF014865.4E-1882166IPR002487Transcription factor, K-box
PROSITE profilePS5129714.6684174IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 227 aa     Download sequence    Send to blast
MGRGKIEIKK IENPTNRQVT YSKRRNGIFK KAQELTVLCD AKVSLIMFSN TNKLNEYISP  60
STSTKKIYDQ YQNALGIDLW GTQYEKMQEQ LRKLNDINHK LRIEIRQRRG EGLNDLSIDH  120
LHGLEQHMTE ALNGVRGRKY HVIKTQNETY RKKVKNLEER HGNLLMEYEA KLEDRQYGLV  180
DNEAAVALAN GASNLYAFRL HHGHNHHHHL PNLHLGDGFG VHELRLP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-16171169MEF2C
5f28_B3e-16171169MEF2C
5f28_C3e-16171169MEF2C
5f28_D3e-16171169MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0577086e-96AF057708.2 Populus balsamifera subsp. trichocarpa PTD protein (PTD) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025894.11e-167PREDICTED: floral homeotic protein DEFICIENS-like
SwissprotQ003J21e-114TM6_VITVI; Agamous-like MADS-box protein TM6
TrEMBLO652111e-162O65211_POPTR; PTD protein
STRINGVIT_04s0023g02820.t011e-111(Vitis vinifera)
STRINGPOPTR_0005s12000.11e-112(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27353375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G54340.13e-68MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]