PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022238.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 330aa    MW: 36850.3 Da    PI: 9.4025
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022238.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer102.33.3e-32113168359
  ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                  ++rY+eClkNhAaslGgh++DGCgEfmp  geegt +++kCaAC+CHRnFHRre + 
  CCG022238.1 113 STRYRECLKNHAASLGGHVLDGCGEFMPG-GEEGTLESFKCAACECHRNFHRREIDG 168
                  679*************************9.999********************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047701.5E-29114166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-22115172IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015668.9E-30115166IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152327.506116165IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Gene3DG3DSA:1.10.10.602.7E-29255328IPR009057Homeodomain-like
SuperFamilySSF466898.21E-19259327IPR009057Homeodomain-like
TIGRFAMsTIGR015654.8E-27266323IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    Send to blast
MELRGQDKGI GMPRSLNYNP PDNRDSSSKV PNSAPARRDH HHAATVLPHA LEHQSLYHHQ  60
QHQAQKPTRD LDLTPDPVQA TTPIATTGAI NTAQTPSRSI SRSPPPPAAS SASTRYRECL  120
KNHAASLGGH VLDGCGEFMP GGEEGTLESF KCAACECHRN FHRREIDGEP QCVANSTLYK  180
ISNGQRNILP PQHLVTSCAP RQLFLHQHHR YHYGTLSAYT TPIAPMTMSF GRGDGGGAAA  240
ESSSEDLNMY QSDLQGQASM QPSMSRKRFR TKFSQDQKDK MTEFAEKLGW RIQKQDEREV  300
QQFCSQVGVK RKVFKVWMHN NKQAMKKNQV
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A7e-222673241875ZF-HD homeobox family protein
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00268DAPTransfer from AT2G18350Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025804.10.0PREDICTED: zinc-finger homeodomain protein 6
RefseqXP_011025805.10.0PREDICTED: zinc-finger homeodomain protein 6
TrEMBLU5GAU40.0U5GAU4_POPTR; Uncharacterized protein
STRINGPOPTR_0007s12970.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF20634253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75240.14e-58homeobox protein 33