PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG022238.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 330aa MW: 36850.3 Da PI: 9.4025 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 102.3 | 3.3e-32 | 113 | 168 | 3 | 59 |
ZF-HD_dimer 3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++rY+eClkNhAaslGgh++DGCgEfmp geegt +++kCaAC+CHRnFHRre + CCG022238.1 113 STRYRECLKNHAASLGGHVLDGCGEFMPG-GEEGTLESFKCAACECHRNFHRREIDG 168 679*************************9.999********************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04770 | 1.5E-29 | 114 | 166 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
ProDom | PD125774 | 2.0E-22 | 115 | 172 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
TIGRFAMs | TIGR01566 | 8.9E-30 | 115 | 166 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 27.506 | 116 | 165 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Gene3D | G3DSA:1.10.10.60 | 2.7E-29 | 255 | 328 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 8.21E-19 | 259 | 327 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01565 | 4.8E-27 | 266 | 323 | IPR006455 | Homeodomain, ZF-HD class |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 330 aa Download sequence Send to blast |
MELRGQDKGI GMPRSLNYNP PDNRDSSSKV PNSAPARRDH HHAATVLPHA LEHQSLYHHQ 60 QHQAQKPTRD LDLTPDPVQA TTPIATTGAI NTAQTPSRSI SRSPPPPAAS SASTRYRECL 120 KNHAASLGGH VLDGCGEFMP GGEEGTLESF KCAACECHRN FHRREIDGEP QCVANSTLYK 180 ISNGQRNILP PQHLVTSCAP RQLFLHQHHR YHYGTLSAYT TPIAPMTMSF GRGDGGGAAA 240 ESSSEDLNMY QSDLQGQASM QPSMSRKRFR TKFSQDQKDK MTEFAEKLGW RIQKQDEREV 300 QQFCSQVGVK RKVFKVWMHN NKQAMKKNQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wh7_A | 7e-22 | 267 | 324 | 18 | 75 | ZF-HD homeobox family protein |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00268 | DAP | Transfer from AT2G18350 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025804.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 6 | ||||
Refseq | XP_011025805.1 | 0.0 | PREDICTED: zinc-finger homeodomain protein 6 | ||||
TrEMBL | U5GAU4 | 0.0 | U5GAU4_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s12970.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF206 | 34 | 253 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75240.1 | 4e-58 | homeobox protein 33 |