PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG022227.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | MYB_related | ||||||||
Protein Properties | Length: 97aa MW: 11117.5 Da PI: 4.6187 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 26.6 | 1.4e-08 | 15 | 58 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +W++e +l+ +a + + ++ +W +Ia+ + g t++++k r+ CCG022227.1 15 NWSAEQNKLFENALAIYDKDtpdRWGKIAKIVK-GTTEEEVKKRY 58 8*******************************9.**********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.3E-7 | 12 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.25E-12 | 14 | 69 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 2.2E-4 | 15 | 65 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 9.72E-7 | 15 | 62 | No hit | No description |
Pfam | PF00249 | 1.5E-6 | 15 | 58 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS50090 | 6.481 | 15 | 62 | IPR017877 | Myb-like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 97 aa Download sequence Send to blast |
MGDMASSSFP QPSTNWSAEQ NKLFENALAI YDKDTPDRWG KIAKIVKGTT EEEVKKRYEI 60 LLDDIKSIES DKVPLPIYKN EGSRKENIIG NEEERLQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-27 | 16 | 83 | 11 | 78 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269|PubMed:15790677}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269|PubMed:15790677, ECO:0000269|PubMed:16236768}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025785.1 | 2e-65 | PREDICTED: protein RADIALIS-like 4 | ||||
Refseq | XP_011025786.1 | 2e-65 | PREDICTED: protein RADIALIS-like 4 | ||||
Swissprot | Q58FS3 | 6e-27 | RAD_ANTMA; Transcription factor RADIALIS | ||||
TrEMBL | A0A2K1ZN83 | 2e-60 | A0A2K1ZN83_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s12860.1 | 7e-57 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 8e-29 | RAD-like 1 |
Publications ? help Back to Top | |||
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