PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022219.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 525aa    MW: 57717.2 Da    PI: 4.5428
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022219.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS355.29.6e-1091595253374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  ++L+ecA+ v+s+  + a + L + ++l+s++g+p++R+ +yf+e+L++r+a         l + ++ +++++e + ++k++++++P+ kf+hltaNq
  CCG022219.1 159 KALVECAQLVESKADQ-AVKSLVKFKDLVSENGNPVERAGFYFAEGLRRRVAVG------ELDVFKNFDQTTEEFTLSYKALNDACPYSKFAHLTANQ 249
                  79********996655.55667789***************************93......33333333344789999********************* PP

         GRAS 101 aIleavegeervHiiDfdisqGlQWpaLlqaLasRpegpp.slRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeLr 195
                  aIlea+e+++++Hi+Df+i +G+QW+aLlqaLa+R++g+p ++Ri g+ +p  g   + +l +tg+rL +fA+ l+++fef++ + + +++l+ + +r
  CCG022219.1 250 AILEATEKASKIHIVDFGIVHGVQWAALLQALATRSAGKPvRIRISGIPAPVLGknPAASLLATGNRLLDFAKLLDLNFEFEP-ILTPIQELNESCFR 346
                  ************************************88777*********9988889999***********************.799*********** PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  v+p+E+laVn++lql++lldes    +   + Lk+ ksl+Pk+v++ e e+++n+  +l+rf +al+yy+a+f+sle +l+r+s er  vEr llg++
  CCG022219.1 347 VEPDEVLAVNFMLQLYNLLDESPVAVE---TALKMAKSLNPKIVTLGEYEVSLNRVGYLTRFKNALRYYTAVFESLEPNLSRDSPERLQVERLLLGQR 441
                  *******************99988888...9******************************************************************* PP

         GRAS 294 ivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslv.lgWkdrpLvsvSaWr 374
                  i++vv  e+   rrer+e + +W   +e++GF++v+ls++a++qak ll +++ s  y++++++  ++ l W++ pL++vS+Wr
  CCG022219.1 442 ISSVVGPEEPGmRRERMEDKVQWGVLMESSGFESVSLSHYAMSQAKILLWNYNySTLYSLDDSQPGFLtLAWNEVPLLTVSSWR 525
                  ******998866*****************************************9999****99877777**************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.782131503IPR005202Transcription factor GRAS
PfamPF035143.3E-106159525IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 525 aa     Download sequence    Send to blast
MSANPNLGYG LSGQAAFSDP FQSGQETGDP PVFSFSNIEQ HHSSGFRLPY FTGAGGEFDS  60
DEWMDSLMNG GDSTDSSNLP SGCDAWQNST DFGMYTSDPF HTCPSRLTVG CSPPSDLNGV  120
ISNSLWVAAS PPQEIKPTTA EIVGGSEEIV LLSSSPVLKA LVECAQLVES KADQAVKSLV  180
KFKDLVSENG NPVERAGFYF AEGLRRRVAV GELDVFKNFD QTTEEFTLSY KALNDACPYS  240
KFAHLTANQA ILEATEKASK IHIVDFGIVH GVQWAALLQA LATRSAGKPV RIRISGIPAP  300
VLGKNPAASL LATGNRLLDF AKLLDLNFEF EPILTPIQEL NESCFRVEPD EVLAVNFMLQ  360
LYNLLDESPV AVETALKMAK SLNPKIVTLG EYEVSLNRVG YLTRFKNALR YYTAVFESLE  420
PNLSRDSPER LQVERLLLGQ RISSVVGPEE PGMRRERMED KVQWGVLMES SGFESVSLSH  480
YAMSQAKILL WNYNYSTLYS LDDSQPGFLT LAWNEVPLLT VSSWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-1491545251375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development (By similarity). Involved in environmental abiotic stress resistance. May increase the expression of stress-responsive genes (PubMed:20616154). Binds DNA in vitro (By similarity). {ECO:0000250|UniProtKB:Q53K16, ECO:0000250|UniProtKB:Q9SCR0, ECO:0000269|PubMed:20616154}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated by drought and high salt stresses, and down-regulated by gibberellic acid (GA) treatment, but not by plant hormone abscisic acid (ABA) application in leaves. Under the salt treatment, expression is induced quickly, and it peaks at 3 hours. Under the drought treatment, the expression is not induced immediately, but reaches its maximum at 3 hours. Under the GA treatment, the expression becomes weaker within 5 hours. {ECO:0000269|PubMed:20616154}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ5118630.0KJ511863.1 Populus euphratica GRAS/SCL transcription factor (SCL7) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025772.10.0PREDICTED: LOW QUALITY PROTEIN: scarecrow-like protein 4
SwissprotA0A024B7I00.0SCL7_POPEU; SCARECROW-LIKE protein 7
TrEMBLB9HEW40.0B9HEW4_POPTR; GRAS family protein
STRINGPOPTR_0007s12760.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62803449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G66770.10.0GRAS family protein