PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022193.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 546aa    MW: 61316.5 Da    PI: 6.1963
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022193.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS302.11.4e-921775452374
         GRAS   2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  ++ L+++A+++++++l+laqa+L+rl+++ +sp g+p+qR+a++f+eAL++ la    ++  + +p   s++n +++++a+ +f+ +sPi+ f+ +t+
  CCG022193.1 177 IQELIKAADCFDTNELQLAQAILERLNHRlQSPIGKPLQRAAFFFKEALQSLLAT--GSTRPQTNPVIPSWSNIVQTIKAYDAFFRISPIPMFADFTT 272
                  689*************************99************************9..4444455666666778************************* PP

         GRAS  99 NqaIleavege.ervHiiDfdisqGlQWpaLlqaLasRpeg.....ppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledle 190
                  NqaIl++++g+   +H+iDfdi+ G ++++L+++L +++++     +p lRiT+v  +  +   e++ ++erL++fA+el+++++++++  +++e+l+
  CCG022193.1 273 NQAILDSLNGNlVFLHVIDFDIGFGCHYASLMRELVDKADScnnltSPLLRITAVITE--DTVIETKLIKERLSQFAHELKIRLHIEFVPFRTFEMLS 368
                  ***********8899***********************955555669*********95..599999**********************999******* PP

         GRAS 191 leeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqe..adh.nsesFlerflealeyysalfdsleaklpreseerikv 285
                  ++++++  gE++aV l+  ++r l   +s+++  +++++ v+++sP vv+vv++e  ++  +++sF + f+++le+ys++fdsl+a + +  ++++k+
  CCG022193.1 369 FKAIEFVDGEKTAVILSPTIFRRL---GSTNN-VTTFVNDVRRVSPSVVIVVDSEgwTESgTGSSFRRNFVDCLEFYSMMFDSLDAAAITGGDWARKI 462
                  ***********************9...55555.667*******************554445677********************99999999****** PP

         GRAS 286 ErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  E +ll+++i  +v   g++       +++Wre +  aG+++v+ s++a  qa++ll kv+++g+ v ++ ++lvl+Wk+rpL+++SaW+
  CCG022193.1 463 EIFLLKPKILAAVEGCGRQ------AASRWREVFVGAGMRSVQSSQFADFQAESLLGKVQVRGFYVAKRLAELVLCWKERPLIATSAWK 545
                  *************999988......7899***********************************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098538.397150525IPR005202Transcription factor GRAS
PfamPF035144.8E-90177545IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MKVPVPSPQN SSCNNQSQNP KPVSCNNTNN NSRNISFNPN NQNLCYEPTS VLDLRRSPSP  60
ARAGKPASAN DPIEWDDHVL QTLDWDSIMR DLDFHDDSAP ALIKNFPQFG PCSESQIQSH  120
NLPEFTASHQ MDATQFLHSD FNDMYINSIP THNLTSLDLS HSFHNNIGNW NAGFDFIQEL  180
IKAADCFDTN ELQLAQAILE RLNHRLQSPI GKPLQRAAFF FKEALQSLLA TGSTRPQTNP  240
VIPSWSNIVQ TIKAYDAFFR ISPIPMFADF TTNQAILDSL NGNLVFLHVI DFDIGFGCHY  300
ASLMRELVDK ADSCNNLTSP LLRITAVITE DTVIETKLIK ERLSQFAHEL KIRLHIEFVP  360
FRTFEMLSFK AIEFVDGEKT AVILSPTIFR RLGSTNNVTT FVNDVRRVSP SVVIVVDSEG  420
WTESGTGSSF RRNFVDCLEF YSMMFDSLDA AAITGGDWAR KIEIFLLKPK ILAAVEGCGR  480
QAASRWREVF VGAGMRSVQS SQFADFQAES LLGKVQVRGF YVAKRLAELV LCWKERPLIA  540
TSAWKC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A7e-2218254425378Protein SCARECROW
5b3h_A7e-2218254424377Protein SCARECROW
5b3h_D7e-2218254424377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025728.10.0PREDICTED: scarecrow-like protein 15
SwissprotO232101e-156SCL15_ARATH; Scarecrow-like protein 15
TrEMBLA0A385JI670.0A0A385JI67_POPTO; GRAS family transcription factor
STRINGPOPTR_0007s12480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59593252
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36710.11e-142GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]