PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG022191.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bZIP
Protein Properties Length: 354aa    MW: 37157.6 Da    PI: 5.7991
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG022191.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_172.37e-23255317163
                  XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
       bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                  e+elkr++rkq+NRe+ArrsR+RK+ae+eeL+ +v++L++ N+ L++el++l++e+ klkse+
  CCG022191.1 255 ERELKRQKRKQSNRESARRSRLRKQAECEELQARVQNLSNDNSNLRNELQSLSEECNKLKSEN 317
                  89***********************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF077775.8E-32194IPR012900G-box binding protein, multifunctional mosaic region
PfamPF165963.5E-6127225No hitNo description
Gene3DG3DSA:1.20.5.1703.1E-19249315No hitNo description
SMARTSM003383.3E-21255319IPR004827Basic-leucine zipper domain
PfamPF001701.2E-20255317IPR004827Basic-leucine zipper domain
PROSITE profilePS5021713.495257320IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.13E-11258315No hitNo description
CDDcd147024.90E-24260311No hitNo description
PROSITE patternPS000360262277IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MGTGEESTPA KPSKPTSSNQ EIPTTPSYPD WSSSMQAYYG AGATPPPFFA STVASPASHP  60
YLWGSQHPLI PPYGTPVPYP ALYPAGGVYA HPNMAPTPNS AQANIEMEGK VPNGKGRASA  120
KKAKGTSGGK AGESGKAASG SGNDGASQSA ESGSDGSSDA SEENTNQQEY GASKKGSFNQ  180
MLADANAQST SAGANIQASV TGKPVVSMPA TNLNIGMDLW NASSAAGATK IRPNPSCATS  240
GVVPAGMPEQ WIQDERELKR QKRKQSNRES ARRSRLRKQA ECEELQARVQ NLSNDNSNLR  300
NELQSLSEEC NKLKSENDSI KEELTRLYGP EVVAKLEQSN PASVPESHGD EGDS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1271277RRSRLRK
2271278RRSRLRKQ
Functional Description ? help Back to Top
Source Description
UniProtBinds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269|PubMed:1373374, ECO:0000269|PubMed:22718771}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1481920.0EF148192.1 Populus trichocarpa clone WS0128_J07 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011025726.10.0PREDICTED: G-box-binding factor 1
SwissprotP427741e-122GBF1_ARATH; G-box-binding factor 1
TrEMBLA9PIG90.0A9PIG9_POPTR; Uncharacterized protein
STRINGPOPTR_0007s12460.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59333450
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36730.11e-100G-box binding factor 1
Publications ? help Back to Top
  1. Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S
    Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development.
    Mol Plant, 2013. 6(6): p. 1758-68
    [PMID:24157607]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Karumuri S,Bandopadhyay R
    In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana.
    Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9
    [PMID:25630103]
  4. Smykowski A,Zimmermann P,Zentgraf U
    CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis.
    Plant Physiol., 2016. 170(2): p. 1164-7
    [PMID:26826725]
  5. Smykowski A,Fischer SM,Zentgraf U
    Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1.
    Plants (Basel), 2015. 4(3): p. 691-709
    [PMID:27135347]
  6. Giri MK, et al.
    GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana.
    Plant J., 2017. 91(5): p. 802-815
    [PMID:28622438]