PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG022190.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 193aa MW: 22529.7 Da PI: 8.7321 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.8 | 4.4e-19 | 49 | 102 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 ++++++eq++ Le F +++++ e++ +LA +lgL+ rqV vWFqNrRa++k+ CCG022190.1 49 KRKLNEEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKN 102 45899***********************************************95 PP | |||||||
2 | HD-ZIP_I/II | 105.1 | 5.4e-34 | 48 | 135 | 2 | 88 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkee.nerLekeveeLr 88 +kr+l++eqv+lLE++F +e+kLe+erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y+++k+++++++ + +e+L++ +e++ CCG022190.1 48 RKRKLNEEQVNLLEMNFGNEHKLESERKDKLALELGLDPRQVAVWFQNRRARWKNKKLEEEYTKMKTSHENIVLKlKEQLSEAEKEIQ 135 8*********************************************************************976551445554444443 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 16.228 | 43 | 103 | IPR001356 | Homeobox domain |
SMART | SM00389 | 1.3E-17 | 46 | 107 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 2.1E-17 | 47 | 110 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 1.91E-15 | 48 | 104 | No hit | No description |
Pfam | PF00046 | 2.6E-16 | 49 | 102 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-20 | 50 | 110 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 1.9E-5 | 74 | 83 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 78 | 101 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 1.9E-5 | 83 | 99 | IPR000047 | Helix-turn-helix motif |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 193 aa Download sequence Send to blast |
MSYKVEDHMA LTSQLYPGVF TQMVPQQGES KPRRRRKKNK DAGLSGARKR KLNEEQVNLL 60 EMNFGNEHKL ESERKDKLAL ELGLDPRQVA VWFQNRRARW KNKKLEEEYT KMKTSHENIV 120 LKLKEQLSEA EKEIQRLSDR IDGVSTNSPS SSLSMAMDPP LLGEFAMEGY EDAFYMPPEN 180 NYIPGMEWIN LYM |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 33 | 50 | RRRKKNKDAGLSGARKRK |
2 | 35 | 50 | RKKNKDAGLSGARKRK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011025724.1 | 1e-121 | PREDICTED: homeobox-leucine zipper protein ATHB-40 | ||||
Swissprot | O23208 | 1e-68 | ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40 | ||||
TrEMBL | A0A2K1ZNF3 | 1e-115 | A0A2K1ZNF3_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s12450.1 | 1e-115 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF4789 | 32 | 57 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36740.1 | 5e-71 | homeobox protein 40 |
Publications ? help Back to Top | |||
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