PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021994.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 401aa    MW: 44366.9 Da    PI: 6.9325
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021994.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H221.56.3e-07168189223
                  EETTTTEEESSHHHHHHHHHHT CS
      zf-C2H2   2 kCpdCgksFsrksnLkrHirtH 23 
                   C++Cgk F+r  nL+ H+r H
  CCG021994.1 168 FCTICGKGFKRDANLRMHMRGH 189
                  6*******************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.59E-5165192No hitNo description
PROSITE profilePS5015712.03167194IPR007087Zinc finger, C2H2
SMARTSM003550.0026167189IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.5E-6168218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280169189IPR007087Zinc finger, C2H2
SMARTSM0035554216249IPR015880Zinc finger, C2H2-like
SMARTSM0035525254276IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MLSNLSFLQQ KIHHLQDLVH LFDGRKGQGL GGQDQLVTQQ QQFLITADLN SIIVQLISTA  60
GSLLPSVKHT LCTDTPNGLL GQLGGLLFPP VAGMSCSPQP QHGSGRKVSD QSDRMDVTGN  120
CGTDQNHFIE EHEMKEEEDA DVGEYLPPGS YDILQLEKEE ILAPHTHFCT ICGKGFKRDA  180
NLRMHMRGHG DEYKTPAALA KPNKESSSDP MVVKRYSCPF SGCKRNKDHK KFQPLKSILC  240
VKNHYKRTHC DKSYTCSRCN TKKFSVTADL KTHEKHCGKD KWLCSCGTTF SRKDKLFGHI  300
ALFQGHTPAI PLEETKGPAV SSDKVDRNEA SNKVGNINFS FGPLEATGSG AHNVMEVNDD  360
ADDPSSCFSP LNFDTCNFSG FHEFPRPPFD DSESSFSFLL S
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. Together with STOP2, plays a critical role in tolerance to major stress factors in acid soils such as proton H(+) and aluminum ion Al(3+). Required for the expression of genes in response to acidic stress (e.g. ALMT1 and MATE), and Al-activated citrate exudation. {ECO:0000269|PubMed:17535918, ECO:0000269|PubMed:18826429, ECO:0000269|PubMed:19321711, ECO:0000269|PubMed:23935008}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By shock H(+) and Al(3+) treatments. {ECO:0000269|PubMed:17535918}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB8117780.0AB811778.1 Populus nigra PnSTOP1 mRNA for STOP1-like protein, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001734.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X1
RefseqXP_011001735.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X2
RefseqXP_011001736.10.0PREDICTED: protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like isoform X3
SwissprotQ9C8N50.0STOP1_ARATH; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1
TrEMBLB9IQK80.0B9IQK8_POPTR; Uncharacterized protein
STRINGPOPTR_0019s11520.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53403254
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.21e-158C2H2 family protein
Publications ? help Back to Top
  1. Kobayashi Y, et al.
    Molecular and physiological analysis of Al³⁺ and H⁺ rhizotoxicities at moderately acidic conditions.
    Plant Physiol., 2013. 163(1): p. 180-92
    [PMID:23839867]
  2. Yokosho K,Yamaji N,Ma JF
    Global transcriptome analysis of Al-induced genes in an Al-accumulating species, common buckwheat (Fagopyrum esculentum Moench).
    Plant Cell Physiol., 2014. 55(12): p. 2077-91
    [PMID:25273892]
  3. Geng X, et al.
    LEUNIG_HOMOLOG transcriptional co-repressor mediates aluminium sensitivity through PECTIN METHYLESTERASE46-modulated root cell wall pectin methylesterification in Arabidopsis.
    Plant J., 2017. 90(3): p. 491-504
    [PMID:28181322]
  4. Balzergue C, et al.
    Low phosphate activates STOP1-ALMT1 to rapidly inhibit root cell elongation.
    Nat Commun, 2017. 8: p. 15300
    [PMID:28504266]
  5. Pelagio-Flores R,Esparza-Reynoso S,Garnica-Vergara A,López-Bucio J,Herrera-Estrella A
    Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation.
    Front Plant Sci, 2017. 8: p. 822
    [PMID:28567051]
  6. Jiang F, et al.
    Identification and characterization of suppressor mutants of stop1.
    BMC Plant Biol., 2017. 17(1): p. 128
    [PMID:28738784]
  7. Daspute AA, et al.
    Transcriptional Regulation of Aluminum-Tolerance Genes in Higher Plants: Clarifying the Underlying Molecular Mechanisms.
    Front Plant Sci, 2017. 8: p. 1358
    [PMID:28848571]
  8. Sharma A,Wai CM,Ming R,Yu Q
    Diurnal Cycling Transcription Factors of Pineapple Revealed by Genome-Wide Annotation and Global Transcriptomic Analysis.
    Genome Biol Evol, 2017. 9(9): p. 2170-2190
    [PMID:28922793]
  9. Zhang Y, et al.
    The Cell Cycle Checkpoint Regulator ATR Is Required for Internal Aluminum Toxicity-Mediated Root Growth Inhibition in Arabidopsis.
    Front Plant Sci, 2018. 9: p. 118
    [PMID:29491872]