PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021992.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 460aa    MW: 52186.7 Da    PI: 7.3266
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021992.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS306.18.4e-94794561373
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l++lLl +A+a+++++   a + L++l + +s +gd++qR++ayf  +Laarl+++ s  y+ +  ++t     +ee+ a++ ++ vsP+++f+h+ta
  CCG021992.1  79 LIHLLLIAATALDKNNVGSALENLTELYQSVSLSGDSVQRVVAYFSDGLAARLLSKKSPFYDMIMKKPTC----EEEFLAFTDLYRVSPYYQFAHFTA 172
                  689**********************************************************999888885....788889999*************** PP

         GRAS  99 NqaIleavege.....ervHiiDfdisqGlQWpaLlqaLasRp..egppslRiTgvgspesgskeeleetgerLakfAeel.gvpfefnvlvakrled 188
                  NqaIlea e+e     +++H+iDfd+s+G+QWp+L+q+L++++  ++  slRiTg+g+      eel+et++rL +fA+ + ++ fef+ l    l  
  CCG021992.1 173 NQAILEAYEKEeennnSALHVIDFDVSYGFQWPSLIQSLSEKAssGNRISLRITGFGR----GIEELQETESRLVSFAKGFrNLVFEFQGL----LRG 262
                  *********9977777789**********************99745556*********....9****************9758*******8....666 PP

         GRAS 189 leleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvE 286
                   +l +Lr k++E++aVnlv++l +l  +s+++++    +Lk v sl+P +vv+veqe +++  sFl rf+e+l+y++a+fdsl+  lp es er ++E
  CCG021992.1 263 SKLINLRKKKNETVAVNLVFHLNTLN-DSLKISD----TLKSVHSLNPSIVVLVEQEGSRSPRSFLSRFMESLHYFAAMFDSLDDCLPLESPERLSIE 355
                  677899****************9995.8888888....************************************************************ PP

         GRAS 287 rellgreivnvvacegae.rrerhetlekWrerleeaGFkpvplsekaakqaklllr......kvksdg.....yrveee.sgslv.lgWkdrpLvsv 370
                  +  lg++i+ ++ c +++       ++e+W+ r+e  GF  ++ls+k   qaklll+        ++dg     ++v e+ +g  + lgW+dr L+++
  CCG021992.1 356 KNHLGKDIKRMLNCDKDDaNCPIYDKMETWKGRMEGHGFAGIKLSSKSLIQAKLLLKirthycPLQFDGdfcggFKVFERdDGKGIsLGWQDRYLITA 453
                  ***************9995667899******************************98332221112343444447776543666667*********** PP

         GRAS 371 SaW 373
                  SaW
  CCG021992.1 454 SAW 456
                  *** PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098548.46253424IPR005202Transcription factor GRAS
PfamPF035142.9E-9179456IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 460 aa     Download sequence    Send to blast
MEDQEELLNL SLAIVTDSNG DMKRKRKRSR ADVSNPLMNT YEGCTEGKIF RLLQMRELML  60
KLDHKRKGAV EENGKGLHLI HLLLIAATAL DKNNVGSALE NLTELYQSVS LSGDSVQRVV  120
AYFSDGLAAR LLSKKSPFYD MIMKKPTCEE EFLAFTDLYR VSPYYQFAHF TANQAILEAY  180
EKEEENNNSA LHVIDFDVSY GFQWPSLIQS LSEKASSGNR ISLRITGFGR GIEELQETES  240
RLVSFAKGFR NLVFEFQGLL RGSKLINLRK KKNETVAVNL VFHLNTLNDS LKISDTLKSV  300
HSLNPSIVVL VEQEGSRSPR SFLSRFMESL HYFAAMFDSL DDCLPLESPE RLSIEKNHLG  360
KDIKRMLNCD KDDANCPIYD KMETWKGRME GHGFAGIKLS SKSLIQAKLL LKIRTHYCPL  420
QFDGDFCGGF KVFERDDGKG ISLGWQDRYL ITASAWHICA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A4e-568745627378Protein SCARECROW
5b3h_A4e-568745626377Protein SCARECROW
5b3h_D4e-568745626377Protein SCARECROW
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134230.0AC213423.1 Populus trichocarpa clone POP042-P09, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011001731.10.0PREDICTED: scarecrow-like protein 21
TrEMBLB9IQL00.0B9IQL0_POPTR; Uncharacterized protein
STRINGPOPTR_0019s11540.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62002952
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.12e-57SCARECROW-like 21