PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021868.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB
Protein Properties Length: 455aa    MW: 51712.9 Da    PI: 8.4774
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021868.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.99.8e-134789144
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44
                     rg WT+eEd ll + v+++ g++Wk+Ia++++ gRt  qc  rw
      CCG021868.1 47 RGGWTKEEDCLLEESVRKFNGRHWKKIAECLP-GRTVSQCFCRW 89
                     789*****************************.*******8888 PP
2Myb_DNA-binding56.28e-1899145148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g WT+eEd+ + ++v+++G + W+ Ia+ ++ gR +kqc++rw+++l
      CCG021868.1  99 KGTWTKEEDDCIMELVRKHGCRKWSVIAKSLP-GRVGKQCRERWFNHL 145
                      799*****************************.*************97 PP
3Myb_DNA-binding46.39.7e-15151194146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      r +WT+ E+  l  +++ +G++ W++Iar ++ gR+++ +k++w+ 
      CCG021868.1 151 RAPWTEKEEMTLTYYHEIYGNK-WAKIARFLP-GRSDNAIKNYWNC 194
                      569*******************.*********.***********95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129412.194293IPR017930Myb domain
SuperFamilySSF466894.88E-1445102IPR009057Homeodomain-like
SMARTSM007171.7E-124695IPR001005SANT/Myb domain
PfamPF002491.7E-104789IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.2E-1949109IPR009057Homeodomain-like
CDDcd001672.31E-115093No hitNo description
PROSITE profilePS5129428.75994149IPR017930Myb domain
SuperFamilySSF466892.66E-3097192IPR009057Homeodomain-like
SMARTSM007174.6E-1498147IPR001005SANT/Myb domain
PfamPF002492.1E-1799145IPR001005SANT/Myb domain
CDDcd001672.65E-13101145No hitNo description
Gene3DG3DSA:1.10.10.606.7E-26110151IPR009057Homeodomain-like
PROSITE profilePS5129416.742150200IPR017930Myb domain
SMARTSM007178.9E-16150198IPR001005SANT/Myb domain
PfamPF002491.8E-12151193IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.3E-21152200IPR009057Homeodomain-like
CDDcd001671.93E-11153196No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MEIMRVKTEE ELFNVDSENE VIDASPCSVY FGASPRLTTG PTRSSRRGGW TKEEDCLLEE  60
SVRKFNGRHW KKIAECLPGR TVSQCFCRWD RVLNPAIVKG TWTKEEDDCI MELVRKHGCR  120
KWSVIAKSLP GRVGKQCRER WFNHLNPTIN RAPWTEKEEM TLTYYHEIYG NKWAKIARFL  180
PGRSDNAIKN YWNCVLKKNL DSYSLHGCTT DLFTVSSPNS YNCAAELNCL KLKERQSVEK  240
AAFVYENMEL RCSAEMSASG SGKANGIGKK NEVRKLHMQA EEKSQNCLHH ESQQLSTLVC  300
NLDAGEVLSM DTCVMHPISP FCCSTPTKYA QSISVNSTSP ESILRNSART FKNTPSIIRK  360
RALRGAAIAR TSDVTCTPSL KFSCANDFQI VDSTNSPNEK QGFLRYFQPE TSFAIKSLKR  420
DFDYAFDMEK EADLGKCGKY IPLSVPLHQN FLESR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-53342009159MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-53342009159MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022739.10.0PREDICTED: uncharacterized protein LOC105124416
RefseqXP_011022740.10.0PREDICTED: uncharacterized protein LOC105124416
TrEMBLA0A3N7G6W90.0A0A3N7G6W9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s12390.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF133012528
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09370.19e-74myb domain protein 3r-3