PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021700.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 699aa    MW: 77852.8 Da    PI: 6.6581
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021700.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B377.41.5e-24132232198
                  EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..E CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelv 93 
                  f+kvlt sd++++g +++ +k+a+e+     +++++ +++l+ +d++g +W++k+i+r++++r++lt+GW+ Fv +++L +gD++vF   + +++el+
  CCG021700.1 132 FCKVLTASDTSTHGGFSVLRKHASEClppldMIQQTPTQELVAKDLHGYEWRFKHIFRGQPRRHLLTTGWSTFVTSKRLVAGDSFVFL--RGENGELR 227
                  99****************************9666666679************************************************..449999** PP

                  EEEE- CS
           B3  94 vkvfr 98 
                  v+v+r
  CCG021700.1 228 VGVRR 232
                  ***98 PP
2Auxin_resp104.41.4e-34258337183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalkvkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  a+ha+st + F v+Y+Pr+  s+F+++++k+++a+++k++vGmRfkm+fe+eds+err+sGt+vgv+d++p  W++SkWrsLk
  CCG021700.1 258 ASHAISTLTLFVVYYKPRT--SQFIISLNKYLEAVNNKFAVGMRFKMRFEGEDSPERRFSGTIVGVEDFSP-YWNDSKWRSLK 337
                  689***************6..9*************************************************.9********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.83E-40123261IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-41124247IPR015300DNA-binding pseudobarrel domain
CDDcd100171.25E-21130232No hitNo description
SMARTSM010194.3E-24132234IPR003340B3 DNA binding domain
PfamPF023621.6E-22132232IPR003340B3 DNA binding domain
PROSITE profilePS5086312.252132234IPR003340B3 DNA binding domain
PfamPF065077.4E-32258337IPR010525Auxin response factor
PfamPF023097.3E-7458623IPR033389AUX/IAA domain
SuperFamilySSF542778.34E-13580663No hitNo description
PROSITE profilePS5174526.72587668IPR000270PB1 domain
PfamPF023093.9E-7633676IPR033389AUX/IAA domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 699 aa     Download sequence    Send to blast
MMAMNRGGGG GGSFSQANSE GCGEDDLYTE LWKACAGPLV DVPKRGERVF YFPQGHMEQL  60
EASTNQELNQ RVPLFNLPSK ILCRVINTQL LAEQETDDVY AQITLLPESD QIETTSPDPC  120
PSEPPRPTVH SFCKVLTASD TSTHGGFSVL RKHASECLPP LDMIQQTPTQ ELVAKDLHGY  180
EWRFKHIFRG QPRRHLLTTG WSTFVTSKRL VAGDSFVFLR GENGELRVGV RRVARQQSSM  240
PSSVISSQSM HLGVLATASH AISTLTLFVV YYKPRTSQFI ISLNKYLEAV NNKFAVGMRF  300
KMRFEGEDSP ERRFSGTIVG VEDFSPYWND SKWRSLKVQW DEPASISRPD RVSPWEIEPC  360
VAQVPANLPQ PVQPKNKRPR PPIEIPAFDL SSTASTPWNS GLAQSCDLTQ PSVTGEGKRN  420
ENHVMWHQKQ TDINGHSNSM TRTQGEGGWL SSPHVNVSQH LFQEAMEDSK SVSPWPVFVG  480
YSTPLSSKSK NDPILDPSEE GRKYKVPTSY RLFGFDLVNQ STNSSPIEKV SAQPISVSSA  540
ATDGRVLAAL PAVDSDRKHE VSKEKKPEQL HISSKEIQSK QSSTSTRSRT KVQLQGIAVG  600
RAVDLTLIKG YGQLIDELEQ LFDIKGQLHP RDKWEIVYTD DEGDMMLVGD DPWPEFCNMV  660
RRIFICSSQD VKKMSPGSKL PMLPLEGEGT VLSSDSAEN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldv_A1e-18013591354Auxin response factor 1
4ldw_A1e-18013591354Auxin response factor 1
4ldw_B1e-18013591354Auxin response factor 1
4ldx_A1e-18013591354Auxin response factor 1
4ldx_B1e-18013591354Auxin response factor 1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1376380KRPRP
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs). Could act as transcriptional activator or repressor. Formation of heterodimers with Aux/IAA proteins may alter their ability to modulate early auxin response genes expression. {ECO:0000269|PubMed:12036261}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011022476.10.0PREDICTED: auxin response factor 9-like
SwissprotQ9XED80.0ARFI_ARATH; Auxin response factor 9
TrEMBLA0A2K2B7070.0A0A2K2B707_POPTR; Auxin response factor
STRINGXP_002518850.10.0(Ricinus communis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF15113396
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23980.10.0auxin response factor 9