PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG021677.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Dof

Protein Properties

Length: 279aa MW: 30683.2 Da PI: 8.2657

Description

Dof family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG021677.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-Dof	122.9	1.1e-38	37	97	2	62
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ke+al+cprC+stnt fCyynnysl+qPryfCk+CrryWt+GG+lrn+PvGgg+rknk+ss CCG021677.1 37 KEQALNCPRCNSTNTNFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNIPVGGGSRKNKRSS 97 7899******************************************************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD007478	4.0E-27	29	89	IPR003851	Zinc finger, Dof-type
Pfam	PF02701	1.2E-32	39	95	IPR003851	Zinc finger, Dof-type
PROSITE profile	PS50884	28.686	41	95	IPR003851	Zinc finger, Dof-type
PROSITE pattern	PS01361	0	43	79	IPR003851	Zinc finger, Dof-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 279 aa Download sequence Send to blast
MDTAQWPQEI VVKPIEEIVT NTCPKPPALE RKARPQKEQA LNCPRCNSTN TNFCYYNNYS 60 LTQPRYFCKT CRRYWTEGGS LRNIPVGGGS RKNKRSSASS SSSSKKLPDL ITPTSLSQTS 120 TQNPKIHEGQ DLNLAFPSTQ SIRSFSELIQ LPSINENNNK NPISSSTSAS TTTSQLSALE 180 LLTGISSRGL NSFPMPVQDP STLYTSSFPL HDFKPTLNFS LDGLGSCYGS LQGVQEANGR 240 LLFPFEDLKQ VSSTADIEQN KEHGDSTGYW TGMFGGGSW

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011022441.1	0.0	PREDICTED: dof zinc finger protein DOF4.6-like isoform X1
Swissprot	Q8LAP8	3e-72	DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBL	B9GXU9	0.0	B9GXU9_POPTR; Uncharacterized protein
STRING	POPTR_0003s14450.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF674	34	137

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G24060.1	5e-63	Dof family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]