PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG021658.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ZF-HD | ||||||||
Protein Properties | Length: 86aa MW: 9517.33 Da PI: 8.9856 | ||||||||
Description | ZF-HD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | ZF-HD_dimer | 48.2 | 2.5e-15 | 43 | 85 | 2 | 44 |
ZF-HD_dimer 2 ekvrYkeClkNhAa.slGghavDGCgEfmpsegeegtaaalkCa 44 + +rYkeCl NhAa s+ g+a DGCgEf+p +eeg +alkC+ CCG021658.1 43 KVMRYKECLENHAAtSICGKAKDGCGEFIPG-EEEGILEALKCS 85 5789********98579*************9.7789*******7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD125774 | 7.0E-9 | 42 | 85 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Pfam | PF04770 | 1.4E-12 | 45 | 85 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
PROSITE profile | PS51523 | 17.402 | 47 | 86 | IPR006456 | ZF-HD homeobox protein, Cys/His-rich dimerisation domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 86 aa Download sequence Send to blast |
MFLLAGTRVA VAVAVEVFLS ILFPKKMDIP LQASRRIKRP YKKVMRYKEC LENHAATSIC 60 GKAKDGCGEF IPGEEEGILE ALKCST |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002306012.2 | 3e-19 | zinc-finger homeodomain protein 3 | ||||
TrEMBL | B9GY33 | 1e-26 | B9GY33_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0004s14270.1 | 1e-18 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF39528 | 2 | 2 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G02540.1 | 5e-15 | homeobox protein 21 |