PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG021625.2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | ERF | ||||||||
Protein Properties | Length: 234aa MW: 25964.9 Da PI: 4.8472 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.2 | 1.8e-17 | 109 | 159 | 2 | 55 |
AP2 2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55 +y+GVr+++ +g+++AeIrdp r r++lg+f+t +Aaka++ a+ k++g CCG021625.2 109 HYRGVRRRP-WGKFAAEIRDPI----RkgSRVWLGTFDTDVDAAKAYDCAAFKMRG 159 7********.**********72....235**********99*************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.730.10 | 1.8E-31 | 108 | 168 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 24.368 | 109 | 167 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 2.81E-22 | 109 | 168 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 8.5E-13 | 109 | 159 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 9.5E-36 | 109 | 173 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 7.50E-30 | 109 | 167 | No hit | No description |
PRINTS | PR00367 | 3.4E-13 | 110 | 121 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 3.4E-13 | 149 | 169 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 234 aa Download sequence Send to blast |
MATPEESSTL ELIRKHLLGD FTSTDEFISN LESSIASVSV KLESSLSGSE PNSPVSDQSY 60 HSTQEAYSFE IKPEIIDLTP PEPVFSGSSN QYPPPEPVKM TDKGETVRHY RGVRRRPWGK 120 FAAEIRDPIR KGSRVWLGTF DTDVDAAKAY DCAAFKMRGR KAILNFPSEA GLSSPPPATG 180 RKRGRSKREE VLPESVDVST ENWNVKWSGE VEEGVSDEEQ LSPLTQETML ARLS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1gcc_A | 2e-27 | 108 | 167 | 1 | 60 | ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1 |
Search in ModeBase |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC216594 | 0.0 | AC216594.1 Populus trichocarpa clone POP017-A13, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022363.1 | 1e-171 | PREDICTED: ethylene-responsive transcription factor ERF106-like | ||||
TrEMBL | B9NBR0 | 1e-160 | B9NBR0_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s15060.1 | 1e-160 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF5257 | 30 | 56 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G07580.1 | 4e-50 | ERF family protein |