PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021578.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ARF
Protein Properties Length: 958aa    MW: 105855 Da    PI: 6.8117
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021578.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.64.8e-23115215198
                  EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE. CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefe 91 
                  f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++++ +
  CCG021578.1 115 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVLFI--WNEKNQ 208
                  99*****************************8544444..48************************************************..788888 PP

                  .EEEEE- CS
           B3  92 lvvkvfr 98 
                  l++++ r
  CCG021578.1 209 LLLGIKR 215
                  8998876 PP
2Auxin_resp1156.6e-38241324183
   Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                  aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++g+sdld  rWpnS Wrs+k
  CCG021578.1 241 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYLKAVYyTRVSVGMRFRMLFETEESSVRRYMGTITGISDLDVARWPNSLWRSVK 324
                  79*********************************989*******************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.35E-48101244IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.3E-40108230IPR015300DNA-binding pseudobarrel domain
CDDcd100172.61E-21114207No hitNo description
PROSITE profilePS5086312.055115217IPR003340B3 DNA binding domain
PfamPF023622.2E-21115216IPR003340B3 DNA binding domain
SMARTSM010193.4E-23115217IPR003340B3 DNA binding domain
PfamPF065076.0E-33241324IPR010525Auxin response factor
SuperFamilySSF542772.45E-5761838No hitNo description
PfamPF023094.2E-6761852IPR033389AUX/IAA domain
PROSITE profilePS5174521.854763847IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009725Biological Processresponse to hormone
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 958 aa     Download sequence    Send to blast
MHGEKRVLNS ELWHACAGPL VSLPAVGSRV VYFPQGHSEQ VAASTYKEVD ARIPNYPSLP  60
PQLICQLHNV TMHADVETDE VYAQLTLQPL SPQEQKDACL PADLGTPSKQ PTNYFCKTLT  120
ASDTSTHGGF SVPRRAAEKV FPPLDFSQQP PAQELIARDL HDNEWKFRHI FRGQPKRHLL  180
TTGWSVFVSA KRLVAGDSVL FIWNEKNQLL LGIKRAIRPQ TVMPSSVLSS DSMHLGLLAA  240
AAHAAATNSR FTIFYNPRAS PSEFVIPLAK YLKAVYYTRV SVGMRFRMLF ETEESSVRRY  300
MGTITGISDL DVARWPNSLW RSVKVGWDES TAGERQPRVS LWEIEPLTTF PMYPSPFPLR  360
PKRPWTPGLP SFHGKLLYII LRALMDGIKD DDLGMNSSLM WLRGDGDRGI QSLNLQGMGV  420
APWMQPRFDT SMRGLQNDVY QTMATAAFQE MRALDPSKSS AASLLQFQQH QNLPIRNAAL  480
MQPLMLQQSP SQQAFLQGVQ ENKHQSQTPT RSHLIHQQLQ HQHSLDSPEQ QQPLLQQQHL  540
ADQQIPNVVP AISQYASATQ SLTPPLQAIS LCQQHSFSDS NGNLMTSPVV SPLQSLLGSF  600
PQDESSHLFN FPRTNPLITS SGWPSKRAAV EPLMSSVAPQ CMMSQVEQLG PPQTSISPSS  660
VSLPPFPGRE CPTEQDGGTD PQSHLLFGVN IEPSSLLMQN GLSGLRGVGS DSDSITVPFS  720
SNYMSIAGTN FSLNPAMAPS SCIDESGFLQ STEIVGQGNP PSRTFVKVYK SGSFGRSLDI  780
TKFSNYNELR SELACMFGLE GQLEDPLRSG WQLVFIDREN DVLLLGDGPW PEFVNSVWCI  840
KILSPQEVQK MGKRGLELLN CVPIQRLSNG SCDDYANRQD SQNLSNAITS EEDVQQVKGK  900
GEEKKGFSFS CGTLNNGGIT GLSFCDACCG TLSADWTFLR DGKVTRKGTI NNNSSDKM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-157434547388Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007615.10.0PREDICTED: auxin response factor 6-like
RefseqXP_011007617.10.0PREDICTED: auxin response factor 6-like
SwissprotA2X1A10.0ARFF_ORYSI; Auxin response factor 6
SwissprotQ6H6V40.0ARFF_ORYSJ; Auxin response factor 6
TrEMBLA0A1L6K4Y20.0A0A1L6K4Y2_POPTO; Auxin response factor
STRINGPOPTR_0011s09450.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF17653488
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.20.0auxin response factor 6
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]