PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG021399.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 768aa MW: 85109.1 Da PI: 6.6187 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 315 | 1.6e-96 | 406 | 767 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++L+++Ae v +g+++ aq +Larl+++ p+g+p++R+a+yf+eAL+ l+ + s+ + a pp++ ++ +++ +++a+k++sevsP+++f ++t+N CCG021399.1 406 LDQLYKAAELVGTGNFSHAQGILARLNQQLFPTGKPLHRAAFYFKEALQLLLLMN-SNSVTAPPPRSPTPFDVIFKMSAYKVLSEVSPLVQFVNFTCN 502 679*************************************************985.5555577888888899************************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dleleeLr 195 qa+leav+ ++r+Hi+Dfdi+ G+QW++++q+L R++g sl+ T+++sp++++ el+ ++++L++fA+e+g++fe +v+ ++le + +l +r CCG021399.1 503 QALLEAVDDADRIHIVDFDIGFGAQWASFMQELP-RNRGVRSLKTTAFASPSTHHPVELSLMRDNLTQFADEIGLSFELDVINFDSLEqhCYSLPFFR 599 *********************************6.78999*****************************************97776651156778889 PP GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293 ++++Ea++Vn+ + +++ +l+s +L+++k+lsP++vv ++ +d+++ +F +++l+al+ y+ l++sl+a +++++ +k+Er+ll+++ CCG021399.1 600 TSEHEAVVVNFPIWCSA--NQPSALPS----LLRFIKQLSPRIVVSLDRGCDRSDLPFPQHILHALQSYTHLLESLDAV-NATTDDVNKIERFLLQPR 690 999*********94433..34555555....*********************************************887.688999************ PP GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 i++ v + ++ + ++ +W+ + +aGF+pv++s+++++qa++++++++++g++ve++++ lvl W++r+L+s+SaWr CCG021399.1 691 IESTVLGRLRA----TDKMPNWKTIFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVEKQQALLVLFWQRRELMSASAWR 767 ******99988....8999*************************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.99 | 379 | 747 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.5E-94 | 406 | 767 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 768 aa Download sequence Send to blast |
MPFRLQAKGG VDFDGFASVC SQQETWTQRQ RQQLLEVNSF ASKEPNSVLH MRRSPSPPTS 60 VSTLSSSSNG GAGGNTSDKT ATITATDKVV NPLNNERKDE WATELQPFPS GLEFVSTGER 120 CGLGLEDWEN MLSEPSQEQS LLRWIAGDVD DTQFGLKQLL QSGSSQLEFD GNVGGGSGVG 180 GLGIVDQGPG FESLSGIPSG VSSIGTNLAP FPGPGVSNIG SGLVAPGSSS GLINYKNVGF 240 GSNDSSVQSP VFSSPTNSVS LPFSLPPGMV YQQNQLQQIE VPEEKPLILN PQILMNQQQS 300 HNPRIRNPNL FLQLPFYQQE NRPLDSQLKR HNSGGMDPIS HVIPKLPFSD PGQELLQRKH 360 QQQQLGFPQR VQFLHQQLQQ KPLVVKKEDL GTQHHQHQHQ HQHALLDQLY KAAELVGTGN 420 FSHAQGILAR LNQQLFPTGK PLHRAAFYFK EALQLLLLMN SNSVTAPPPR SPTPFDVIFK 480 MSAYKVLSEV SPLVQFVNFT CNQALLEAVD DADRIHIVDF DIGFGAQWAS FMQELPRNRG 540 VRSLKTTAFA SPSTHHPVEL SLMRDNLTQF ADEIGLSFEL DVINFDSLEQ HCYSLPFFRT 600 SEHEAVVVNF PIWCSANQPS ALPSLLRFIK QLSPRIVVSL DRGCDRSDLP FPQHILHALQ 660 SYTHLLESLD AVNATTDDVN KIERFLLQPR IESTVLGRLR ATDKMPNWKT IFASAGFSPV 720 TFSNFTETQA ECVVKRTPVR GFHVEKQQAL LVLFWQRREL MSASAWRC |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hyz_A | 1e-30 | 424 | 767 | 22 | 375 | GRAS family transcription factor containing protein, expressed |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011033959.1 | 0.0 | PREDICTED: scarecrow-like protein 27 | ||||
TrEMBL | A0A2K2B593 | 0.0 | A0A2K2B593_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0003s11020.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF13269 | 21 | 30 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G00150.1 | 1e-120 | GRAS family protein |