PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021399.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 768aa    MW: 85109.1 Da    PI: 6.6187
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021399.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3151.6e-964067672374
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                   ++L+++Ae v +g+++ aq +Larl+++  p+g+p++R+a+yf+eAL+  l+ + s+ + a pp++ ++ +++ +++a+k++sevsP+++f ++t+N
  CCG021399.1 406 LDQLYKAAELVGTGNFSHAQGILARLNQQLFPTGKPLHRAAFYFKEALQLLLLMN-SNSVTAPPPRSPTPFDVIFKMSAYKVLSEVSPLVQFVNFTCN 502
                  679*************************************************985.5555577888888899************************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrle..dleleeLr 195
                  qa+leav+ ++r+Hi+Dfdi+ G+QW++++q+L  R++g  sl+ T+++sp++++  el+ ++++L++fA+e+g++fe +v+  ++le  + +l  +r
  CCG021399.1 503 QALLEAVDDADRIHIVDFDIGFGAQWASFMQELP-RNRGVRSLKTTAFASPSTHHPVELSLMRDNLTQFADEIGLSFELDVINFDSLEqhCYSLPFFR 599
                  *********************************6.78999*****************************************97776651156778889 PP

         GRAS 196 vkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgre 293
                  ++++Ea++Vn+ +      +++ +l+s    +L+++k+lsP++vv  ++ +d+++ +F +++l+al+ y+ l++sl+a   +++++ +k+Er+ll+++
  CCG021399.1 600 TSEHEAVVVNFPIWCSA--NQPSALPS----LLRFIKQLSPRIVVSLDRGCDRSDLPFPQHILHALQSYTHLLESLDAV-NATTDDVNKIERFLLQPR 690
                  999*********94433..34555555....*********************************************887.688999************ PP

         GRAS 294 ivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  i++ v  + ++    + ++ +W+  + +aGF+pv++s+++++qa++++++++++g++ve++++ lvl W++r+L+s+SaWr
  CCG021399.1 691 IESTVLGRLRA----TDKMPNWKTIFASAGFSPVTFSNFTETQAECVVKRTPVRGFHVEKQQALLVLFWQRRELMSASAWR 767
                  ******99988....8999*************************************************************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.99379747IPR005202Transcription factor GRAS
PfamPF035145.5E-94406767IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 768 aa     Download sequence    Send to blast
MPFRLQAKGG VDFDGFASVC SQQETWTQRQ RQQLLEVNSF ASKEPNSVLH MRRSPSPPTS  60
VSTLSSSSNG GAGGNTSDKT ATITATDKVV NPLNNERKDE WATELQPFPS GLEFVSTGER  120
CGLGLEDWEN MLSEPSQEQS LLRWIAGDVD DTQFGLKQLL QSGSSQLEFD GNVGGGSGVG  180
GLGIVDQGPG FESLSGIPSG VSSIGTNLAP FPGPGVSNIG SGLVAPGSSS GLINYKNVGF  240
GSNDSSVQSP VFSSPTNSVS LPFSLPPGMV YQQNQLQQIE VPEEKPLILN PQILMNQQQS  300
HNPRIRNPNL FLQLPFYQQE NRPLDSQLKR HNSGGMDPIS HVIPKLPFSD PGQELLQRKH  360
QQQQLGFPQR VQFLHQQLQQ KPLVVKKEDL GTQHHQHQHQ HQHALLDQLY KAAELVGTGN  420
FSHAQGILAR LNQQLFPTGK PLHRAAFYFK EALQLLLLMN SNSVTAPPPR SPTPFDVIFK  480
MSAYKVLSEV SPLVQFVNFT CNQALLEAVD DADRIHIVDF DIGFGAQWAS FMQELPRNRG  540
VRSLKTTAFA SPSTHHPVEL SLMRDNLTQF ADEIGLSFEL DVINFDSLEQ HCYSLPFFRT  600
SEHEAVVVNF PIWCSANQPS ALPSLLRFIK QLSPRIVVSL DRGCDRSDLP FPQHILHALQ  660
SYTHLLESLD AVNATTDDVN KIERFLLQPR IESTVLGRLR ATDKMPNWKT IFASAGFSPV  720
TFSNFTETQA ECVVKRTPVR GFHVEKQQAL LVLFWQRREL MSASAWRC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A1e-3042476722375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033959.10.0PREDICTED: scarecrow-like protein 27
TrEMBLA0A2K2B5930.0A0A2K2B593_POPTR; Uncharacterized protein
STRINGPOPTR_0003s11020.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF132692130
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G00150.11e-120GRAS family protein