PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021387.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family WRKY
Protein Properties Length: 309aa    MW: 34903.5 Da    PI: 9.8415
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021387.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.83.4e-31239297360
                  -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
         WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                  D ++WrKYGqK++kgs++prsYY+C+ + gCp++k+vers edp+++++ YegeHnh+k
  CCG021387.1 239 DDHSWRKYGQKPIKGSPYPRSYYKCSRRrGCPARKHVERSLEDPTMLVVAYEGEHNHSK 297
                  99*************************99****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105331.8E-12188235IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.809.4E-32228297IPR003657WRKY domain
PROSITE profilePS5081129.115232298IPR003657WRKY domain
SuperFamilySSF1182903.01E-26235296IPR003657WRKY domain
SMARTSM007747.3E-36237297IPR003657WRKY domain
PfamPF031061.1E-26239295IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 309 aa     Download sequence    Send to blast
MTPRWDFKIH EVAQSSFRHA YNLFSCISDK NQKRSIQEAS LIAQDAVNEF RNLVRILDDS  60
AQSDCKRIRK GPLPHAHDIN PVELMDSPNS VSKSSDNNFS QPNRELFPLQ SILSTTSLTH  120
VNTLNLYREK QKKSEDNVDV KNNLIMGVNH SPLQTSAYFL NSDGSGRIIH HSSSEGLPSQ  180
DDSIVSKSKS EETSAKCLAS TGGCHCSKRR QVIPNLKSRI KKIIKVPALS TKLADIPPDD  240
HSWRKYGQKP IKGSPYPRSY YKCSRRRGCP ARKHVERSLE DPTMLVVAYE GEHNHSKIAF  300
QSPNMMLHI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-202332951071WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033941.10.0PREDICTED: probable WRKY transcription factor 17
TrEMBLA0A2K2B5B20.0A0A2K2B5B2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s11120.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF144241318
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.14e-48WRKY DNA-binding protein 21