PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG021377.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

NAC

Protein Properties

Length: 355aa MW: 41107.9 Da PI: 7.1235

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG021377.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	173.8	5e-54	7	136	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk 95 +ppGfrFhPtdeelv++yL+kkv++k+++l +vik+vd+yk+ePwdL++ k+ + +++ewyfFs++dkky+tg+r+nratk+g+Wkatg+dk+++s CCG021377.1 7 VPPGFRFHPTDEELVDYYLRKKVASKRIDL-DVIKDVDLYKIEPWDLQElcKLGTeDQNEWYFFSHKDKKYPTGTRTNRATKAGFWKATGRDKSIYS- 102 69**************************.9***********954544442556**********************************. PP NAM 96 kgelvglkktLvfykgrapkgektdWvmheyrle 129 +++lvg++ktLvfykgrap+g+k+d +mheyrle CCG021377.1 103 RHSLVGMRKTLVFYKGRAPNGQKSDLIMHEYRLE 136 8899**************************85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.83E-59	5	156	IPR003441	NAC domain
PROSITE profile	PS51005	57.298	7	156	IPR003441	NAC domain
Pfam	PF02365	1.2E-26	8	135	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 355 aa Download sequence Send to blast
MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDVIK DVDLYKIEPW DLQELCKLGT 60 EDQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKSI YSRHSLVGMR KTLVFYKGRA 120 PNGQKSDLIM HEYRLETNEN GTPQAKGWVV CRVFKKKMPT MRKVSDYDSP CWYDDQVSFM 180 PETDSPRRIS QPYASYLHHY TCKQELELPY NMPHDPFLQL PQLESPKVPQ SAATASCNSV 240 IAYAYDRTNG STLQSSTLTQ EEQMQQCHQQ NLNSFYNNNN SEQAVDQVTD WRVLDKFVAS 300 QLSHEDASKG TSNYNKDTFH AAEQMHMLAN DSKSSEIAQE YASTSTSSCQ IDLWK

Sequence ? help Back to Top

Protein Sequence Length: 355 aa Download sequence Send to blast

MNTFSHVPPG FRFHPTDEEL VDYYLRKKVA SKRIDLDVIK DVDLYKIEPW DLQELCKLGT  60
EDQNEWYFFS HKDKKYPTGT RTNRATKAGF WKATGRDKSI YSRHSLVGMR KTLVFYKGRA  120
PNGQKSDLIM HEYRLETNEN GTPQAKGWVV CRVFKKKMPT MRKVSDYDSP CWYDDQVSFM  180
PETDSPRRIS QPYASYLHHY TCKQELELPY NMPHDPFLQL PQLESPKVPQ SAATASCNSV  240
IAYAYDRTNG STLQSSTLTQ EEQMQQCHQQ NLNSFYNNNN SEQAVDQVTD WRVLDKFVAS  300
QLSHEDASKG TSNYNKDTFH AAEQMHMLAN DSKSSEIAQE YASTSTSSCQ IDLWK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3ulx_A	5e-50	6	157	14	169	Stress-induced transcription factor NAC1
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the secondary wall NAC binding element (SNBE), 5'-(T/A)NN(C/T)(T/C/G)TNNNNNNNA(A/C)GN(A/C/T)(A/T)-3', in the promoter of target genes (By similarity). Involved in xylem formation by promoting the expression of secondary wall-associated transcription factors and of genes involved in secondary wall biosynthesis and programmed cell death, genes driven by the secondary wall NAC binding element (SNBE). Triggers thickening of secondary walls (PubMed:16103214, PubMed:25148240). {ECO:0000250\|UniProtKB:Q9LVA1, ECO:0000269\|PubMed:16103214, ECO:0000269\|PubMed:25148240}.

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ215854	0.0	HQ215854.1 Populus trichocarpa wood-associated NAC domain transcription factor 4B (WND4B) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011033923.1	0.0	PREDICTED: NAC domain-containing protein 7-like
Swissprot	Q9FWX2	1e-162	NAC7_ARATH; NAC domain-containing protein 7
TrEMBL	B9GVQ8	0.0	B9GVQ8_POPTR; Wood-associated NAC domain transcription factor 4B
STRING	POPTR_0003s11250.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1269	33	106

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G12260.1	1e-155	NAC 007

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469]