PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG021324.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 952aa MW: 102464 Da PI: 5.8544

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG021324.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	43.3	9.4e-14	27	118	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.....rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 +W+++ + +L++a ++ +l+rg+l++++W++v++++ + ++ r+ +qCk++++ ++k+yk +k + + + + s +p+f++l+a CCG021324.1 27 CWSEEATSTLVDAWGRRYLELNRGNLRQKDWQDVADAVnalhgHTKKTYRTDVQCKNRIDTIKKKYKIEKSHVVSSNGTLASAWPFFERLDA 118 7************************************9999999999*******************9999888889*****985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.0E-25	25	119	No hit	No description
Pfam	PF05922	2.6E-9	299	377	IPR010259	Peptidase S8 propeptide/proteinase inhibitor I9
Gene3D	G3DSA:3.40.50.200	6.7E-77	352	574	IPR000209	Peptidase S8/S53 domain
SuperFamily	SSF52743	4.06E-71	377	572	IPR000209	Peptidase S8/S53 domain
CDD	cd04852	8.03E-134	377	768	No hit	No description
PRINTS	PR00723	5.1E-19	401	420	IPR015500	Peptidase S8, subtilisin-related
Pfam	PF00082	3.0E-55	401	773	IPR000209	Peptidase S8/S53 domain
PROSITE pattern	PS00136	0	406	417	IPR023827	Peptidase S8, subtilisin, Asp-active site
PRINTS	PR00723	5.1E-19	463	476	IPR015500	Peptidase S8, subtilisin-related
CDD	cd02120	3.37E-34	566	667	No hit	No description
Pfam	PF02225	1.7E-13	578	653	IPR003137	PA domain
Gene3D	G3DSA:3.50.30.30	6.8E-12	579	664	No hit	No description
SuperFamily	SSF52025	6.8E-8	586	685	No hit	No description
SuperFamily	SSF52743	4.06E-71	628	805	IPR000209	Peptidase S8/S53 domain
Gene3D	G3DSA:3.40.50.200	6.7E-77	676	805	IPR000209	Peptidase S8/S53 domain
PRINTS	PR00723	5.1E-19	731	747	IPR015500	Peptidase S8, subtilisin-related

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006508	Biological Process	proteolysis
GO:0004252	Molecular Function	serine-type endopeptidase activity

Sequence ? help Back to Top
Protein Sequence Length: 952 aa Download sequence Send to blast
MGDLIESSSV TPSTTPHSRP LPIREDCWSE EATSTLVDAW GRRYLELNRG NLRQKDWQDV 60 ADAVNALHGH TKKTYRTDVQ CKNRIDTIKK KYKIEKSHVV SSNGTLASAW PFFERLDALI 120 GSNFNSSGKK HLSPSPPVAL PLPPSYRRTP QVSSTPPPQP PALAVALPQK RPLPVDDGYF 180 RRNYSAMAAA AAAVESDSEE DEDEEFEGGD GERAEEDVEG EGIKRLALAI ERFGEVYERV 240 ESEKLKQMVD LEKQRMKFAK DLEMERMRIF TETQVQLEKI KKGKPLRTSE TSQKGKFETY 300 IVFVQKPEGG VSADDLDGWY KSFLPVTIPS SNHQERMVYS YRHVATGFAA KLTAEEAKAM 360 EDKDGFLSAK PQKILSLQTT HSPNFLGLQK NLGFWRNSTY GKGVIIGVLD TGISPDHPSF 420 SDEGVPPPPT KWKGKCNFNG TVCNNKLIGA RDFTSSKAAP PFDEVGHGTH TASTAAGNFV 480 NDASVFGNAN GTAVGMAPLA HLAIYKVCSD FGCTESDILA AMDAAVEDGV DVLSLSLGGG 540 SAPFFEDSIA VGAFGATQKG IFVSCSAGNE GAHGSQSAAF CAPESLTDID VKGKIVLCER 600 GGGIARIDKG QAVKDAGGAA MILMNDKDSG YSTLADAHVL PASHVSYSAG LSIKAYINST 660 QVPTATIMFL GTKIGDKTAP TVASFSSRGP SMASPGILKP DIIGPGVSIL AAWPVSVENR 720 TDKKSTFNII SGTSMSCPHL SGIAALLKSA HPDWSPAAIK SAIMTTADLV NLGNQPILDE 780 RLLPADILAT GAGHVNPSKA SDPGLVYDIQ PDDYVPYLCG LGYPDRDISY IVQRQVKCSE 840 KSSILEAQLN YPSFSIVYGP NPATQTYTRT VTNVGPPNSF YTAFVDPPPG VNVTVTPNNI 900 IFTNTEQTAT YSVTFTATSE SNNDPIGQGY IRWVSDKHSI RSQILVSFSN ED

Sequence ? help Back to Top

Protein Sequence Length: 952 aa Download sequence Send to blast

MGDLIESSSV TPSTTPHSRP LPIREDCWSE EATSTLVDAW GRRYLELNRG NLRQKDWQDV  60
ADAVNALHGH TKKTYRTDVQ CKNRIDTIKK KYKIEKSHVV SSNGTLASAW PFFERLDALI  120
GSNFNSSGKK HLSPSPPVAL PLPPSYRRTP QVSSTPPPQP PALAVALPQK RPLPVDDGYF  180
RRNYSAMAAA AAAVESDSEE DEDEEFEGGD GERAEEDVEG EGIKRLALAI ERFGEVYERV  240
ESEKLKQMVD LEKQRMKFAK DLEMERMRIF TETQVQLEKI KKGKPLRTSE TSQKGKFETY  300
IVFVQKPEGG VSADDLDGWY KSFLPVTIPS SNHQERMVYS YRHVATGFAA KLTAEEAKAM  360
EDKDGFLSAK PQKILSLQTT HSPNFLGLQK NLGFWRNSTY GKGVIIGVLD TGISPDHPSF  420
SDEGVPPPPT KWKGKCNFNG TVCNNKLIGA RDFTSSKAAP PFDEVGHGTH TASTAAGNFV  480
NDASVFGNAN GTAVGMAPLA HLAIYKVCSD FGCTESDILA AMDAAVEDGV DVLSLSLGGG  540
SAPFFEDSIA VGAFGATQKG IFVSCSAGNE GAHGSQSAAF CAPESLTDID VKGKIVLCER  600
GGGIARIDKG QAVKDAGGAA MILMNDKDSG YSTLADAHVL PASHVSYSAG LSIKAYINST  660
QVPTATIMFL GTKIGDKTAP TVASFSSRGP SMASPGILKP DIIGPGVSIL AAWPVSVENR  720
TDKKSTFNII SGTSMSCPHL SGIAALLKSA HPDWSPAAIK SAIMTTADLV NLGNQPILDE  780
RLLPADILAT GAGHVNPSKA SDPGLVYDIQ PDDYVPYLCG LGYPDRDISY IVQRQVKCSE  840
KSSILEAQLN YPSFSIVYGP NPATQTYTRT VTNVGPPNSF YTAFVDPPPG VNVTVTPNNI  900
IFTNTEQTAT YSVTFTATSE SNNDPIGQGY IRWVSDKHSI RSQILVSFSN ED

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
3i6s_A	1e-105	379	947	1	643	Subtilisin-like protease
3i6s_B	1e-105	379	947	1	643	Subtilisin-like protease
3i74_A	1e-105	379	947	1	643	Subtilisin-like protease
3i74_B	1e-105	379	947	1	643	Subtilisin-like protease
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011034012.1	0.0	PREDICTED: uncharacterized protein LOC105132300
TrEMBL	A0A2K2B5P9	0.0	A0A2K2B5P9_POPTR; Uncharacterized protein
STRING	POPTR_0003s11860.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF1887	33	79

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G58630.1	7e-38	sequence-specific DNA binding transcription factors