PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021246.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 546aa    MW: 61162.2 Da    PI: 5.5663
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021246.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4071.8e-1241765461374
         GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 
                  l+++Ll+cA+avs+ d ++a  l+  l +++s +g+p+qRl ay++e+L+arl  s+s++y+al++++     ss+ ++++ ++++++P+ kf++  a
  CCG021246.1 176 LKHVLLACADAVSNADIQRAAGLMHVLDQMVSVSGEPLQRLGAYMLEGLRARLELSGSKIYRALKCEAPI---SSDLMTYMGILYQICPYWKFAYASA 270
                  689******************************************************************9...9999999****************** PP

         GRAS  99 NqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrledleleeL 194
                  N  I eave e r+HiiDf+i qG QW+ L+q La+Rp+gpp + iTgv++++s   +   l  +g+rL+k+Ae+++vpfef+  va +  +++le+L
  CCG021246.1 271 NVVIREAVEYEPRIHIIDFQIAQGSQWILLMQMLACRPGGPPAIHITGVDDSQSAhaRGGGLDIVGQRLSKVAESCNVPFEFHD-VAMDGCEVQLEHL 367
                  ***************************************************9988889999***********************.6888999****** PP

         GRAS 195 rvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgr 292
                  rv+pgEa++Vn+ + lh+++desv++ ++rd+++++vkslsP++v++veqe+++n+++F+ rf+e+l+yy+a+f+s++a+ + + ++ri+ E+++++r
  CCG021246.1 368 RVQPGEAVVVNFPYVLHHMPDESVNTWNHRDRLIRMVKSLSPRIVTLVEQESNTNTKPFFPRFIETLDYYAAMFESIAAGGSMDVRQRINAEQQCVAR 465
                  *****************************************************************************99989999************* PP

         GRAS 293 eivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374
                  +ivn++ace+aer+erhe l+kWr+r+++aGF+++pl++++++ +k ll++++ d y+v+e++ +l+l W+dr + + SaWr
  CCG021246.1 466 DIVNMIACEEAERVERHELLAKWRSRFTMAGFNQYPLGSSVTTAVKDLLKEYHRD-YSVQERDWALYLRWRDRDMATSSAWR 546
                  *****************************************************66.*************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.743150527IPR005202Transcription factor GRAS
PfamPF035146.1E-122176546IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MQTSQKHRSA GIHGFYHQPV LEIDTYGLSH IQILDKNMYS DAGSQGTSVS FETCLGQFFT  60
LESSSATAGF VVYDSPAASI SSNRSPFSSQ GSLSCISDPR HSPENLYGSP LSGSSSADDS  120
NILRQKLREL EISLLGPESD ITDSGSFCFV SGGYQAEPYS SWDWNQMMEM IPRLDLKHVL  180
LACADAVSNA DIQRAAGLMH VLDQMVSVSG EPLQRLGAYM LEGLRARLEL SGSKIYRALK  240
CEAPISSDLM TYMGILYQIC PYWKFAYASA NVVIREAVEY EPRIHIIDFQ IAQGSQWILL  300
MQMLACRPGG PPAIHITGVD DSQSAHARGG GLDIVGQRLS KVAESCNVPF EFHDVAMDGC  360
EVQLEHLRVQ PGEAVVVNFP YVLHHMPDES VNTWNHRDRL IRMVKSLSPR IVTLVEQESN  420
TNTKPFFPRF IETLDYYAAM FESIAAGGSM DVRQRINAEQ QCVARDIVNM IACEEAERVE  480
RHELLAKWRS RFTMAGFNQY PLGSSVTTAV KDLLKEYHRD YSVQERDWAL YLRWRDRDMA  540
TSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A2e-5118354525377Protein SCARECROW
5b3h_D2e-5118354525377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011004506.10.0PREDICTED: scarecrow-like protein 13
RefseqXP_011004507.10.0PREDICTED: scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLB9HCV90.0B9HCV9_POPTR; GRAS family protein
STRINGPOPTR_0006s01720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF43773360
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13