PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG021206.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 387aa MW: 44819.4 Da PI: 8.4324

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG021206.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	199.1	2.7e-61	6	367	2	374
GRAS 2 velLlecAeavssgdlelaqalLarlsel.aspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshlta 98 + Ll+ A+a+++gdl+la+++ ++++ l +++ +++++l+ +++eAL +rl++ ly p+ ++ s+++ + P++ f+ CCG021206.1 6 LNKLLASAKAIEDGDLNLAETVFKEIKRLnDANTSTATRKLVRFYAEALIRRLYK----LYPRNPTPLAP---STDSY--YIRCWRFLPFVWFAEKSS 94 5789**********************95555669***************....55433333333...33332..22356789****** PP GRAS 99 NqaIleavegeervHiiDfd.isqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgv.pfefnvlvakrledleleeL 194 + Il+av g+++vH+i f+ ++ + L++ L ++ ++ s+++T + ++ s+++e l+e+ + La A++l++ +f+ + + a++ + + ++L CCG021206.1 95 HHSILDAVVGKKKVHVINFSnMEFNMMIRDLMRDLVKKVGSGLSFQVTNIRPKLSNNEEYLQEMDRVLAAEAKTLRLtDFKLDHVFANTAAGIVESTL 192 ***************8356689999*******************9999****************946*99999999989999 PP GRAS 195 rvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpres.eerikvEre 288 ++k+ +Ea++V++ ++lh+l +++le+ vL+ +k+l+P+++v+veqea+hns++ l+r+++++ yys++fds+e+ + + e++i+ E CCG021206.1 193 NLKRtseDEAIVVKWEFELHKLILVPGALEK----VLSKLKELRPEIMVIVEQEANHNSPDILDRLAQSFPYYSSVFDSIEKDTTEYDlENKISWEMD 286 8888888************99999999....*****************************************988888885666666666 PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++r+i+nvva e ++ erhet + Wr++l+++GF+pv+ + l + y++e ++g+ +l + pLv +SaW+ CCG021206.1 287 -FRRQITNVVAREDIQHAERHETQAWWRDQLRRSGFHPVRQWFNHIR--GFLFSDLT--QYTIEGKNGCPFLRRYTVPLVITSAWK 367 .*********************************985544443..33445444..5***********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	30.4	1	351	IPR005202	Transcription factor GRAS
Pfam	PF03514	9.3E-59	6	367	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
MATLLLNKLL ASAKAIEDGD LNLAETVFKE IKRLNDANTS TATRKLVRFY AEALIRRLYK 60 LYPRNPTPLA PSTDSYYIRC WRFLPFVWFA EKSSHHSILD AVVGKKKVHV INFSNMEFNM 120 MIRDLMRDLV KKVGSGLSFQ VTNIRPKLSN NEEYLQEMDR VLAAEAKTLR LTDFKLDHVF 180 ANTAAGIVES TLNLKRTSED EAIVVKWEFE LHKLILVPGA LEKVLSKLKE LRPEIMVIVE 240 QEANHNSPDI LDRLAQSFPY YSSVFDSIEK DTTEYDLENK ISWEMDFRRQ ITNVVAREDI 300 QHAERHETQA WWRDQLRRSG FHPVRQWFNH IRGFLFSDLT QYTIEGKNGC PFLRRYTVPL 360 VITSAWKPEL AQSDGGTGQS HSTLCFS

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

MATLLLNKLL ASAKAIEDGD LNLAETVFKE IKRLNDANTS TATRKLVRFY AEALIRRLYK  60
LYPRNPTPLA PSTDSYYIRC WRFLPFVWFA EKSSHHSILD AVVGKKKVHV INFSNMEFNM  120
MIRDLMRDLV KKVGSGLSFQ VTNIRPKLSN NEEYLQEMDR VLAAEAKTLR LTDFKLDHVF  180
ANTAAGIVES TLNLKRTSED EAIVVKWEFE LHKLILVPGA LEKVLSKLKE LRPEIMVIVE  240
QEANHNSPDI LDRLAQSFPY YSSVFDSIEK DTTEYDLENK ISWEMDFRRQ ITNVVAREDI  300
QHAERHETQA WWRDQLRRSG FHPVRQWFNH IRGFLFSDLT QYTIEGKNGC PFLRRYTVPL  360
VITSAWKPEL AQSDGGTGQS HSTLCFS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	2e-15	13	368	27	380	Protein SCARECROW
5b3h_A	2e-15	13	368	26	379	Protein SCARECROW
5b3h_D	2e-15	13	368	26	379	Protein SCARECROW
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011015945.1	0.0	PREDICTED: DELLA protein GAIP-B-like
TrEMBL	A0A2K1ZTT2	0.0	A0A2K1ZTT2_POPTR; Uncharacterized protein
STRING	POPTR_0007s01550.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF17902	3	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01570.1	9e-66	GRAS family protein