PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG021204.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

GRAS

Protein Properties

Length: 856aa MW: 96621 Da PI: 4.5996

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG021204.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	22.7	1.1e-07	7	66	3	62
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselyk 62 + L++cA+a++ g+l+ a+ lL+++ + + ++++ l++y++eAL +rl++ ++ CCG021204.1 7 NKLVDCAKAIEGGNLNDADLLLKEIIASNESLSRATKSLVKYYAEALVRRLYKLYPRNLT 66 579*************************************************95554444 PP
2	GRAS	148.9	4.7e-46	99	334	137	374
GRAS 137 egppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklv 231 gp s+R+T vg+ s ++ +++t erL+ Ae++ ++fe + lva++ +d+ + L++ + +E+++V++ +qlh+ll ++++e+ vL+ + CCG021204.1 99 TGPISFRLTFVGPVLSIAADHTQKTLERLHGEAERFAIDFEVRHLVANSAADIVDSVLKLTRasgDETIVVKWKFQLHKLLTLTGASEK----VLSKL 192 57789******8888***************************99999888898888889************77777777....* PP GRAS 232 kslsPkvvvvveqeadhnsesFlerflealeyysalfdsl.eaklpres..eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkp 326 ++l+P+++++veqea+hn++++l+ f+++++yys +fdsl + ++ +s r++ ++ ++r+i+++va g++++erhet++ W++rl+++GF+ CCG021204.1 193 RELKPEIMIIVEQEASHNGQNLLDCFSKSFQYYSIVFDSLdKDNVDINSdgVRRKVFWEMSFRRQICKLVAPGGTDHIERHETFAYWQDRLRRFGFRH 290 ************************************888888888766677778888********************************* PP GRAS 327 vplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++++ + ++ r+ +y++ee++ l k+ pLv+ SaW+ CCG021204.1 291 YRFKPQSFSNF---CREQM-PEYSWEEKDRHPQLRRKGIPLVFSSAWK 334 99887764...33333.56************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	18.388	1	318	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.8E-5	7	66	IPR005202	Transcription factor GRAS
Pfam	PF03514	1.6E-43	99	334	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 856 aa Download sequence Send to blast
MDTSPLNKLV DCAKAIEGGN LNDADLLLKE IIASNESLSR ATKSLVKYYA EALVRRLYKL 60 YPRNLTPLIP SGTDQLPETD YPFSPFFCFG DFTTLDPSTG PISFRLTFVG PVLSIAADHT 120 QKTLERLHGE AERFAIDFEV RHLVANSAAD IVDSVLKLTR ASGDETIVVK WKFQLHKLLT 180 LTGASEKVLS KLRELKPEIM IIVEQEASHN GQNLLDCFSK SFQYYSIVFD SLDKDNVDIN 240 SDGVRRKVFW EMSFRRQICK LVAPGGTDHI ERHETFAYWQ DRLRRFGFRH YRFKPQSFSN 300 FCREQMPEYS WEEKDRHPQL RRKGIPLVFS SAWKPDPTQL NSVILTCWGE IIIIYAGSNM 360 ELDEENYSKF HENQLDDPHI MTQEIMWSEK CFSINQIAAS VEIYDILEYT CNVHNLPLAL 420 TWISDRRDCN VNSNGKLRIV ESACYLNDIT MEGFVEACGQ HHLEEGQGVA GKALQLNGMY 480 FIPDVSELSA DAYPFVCDAW EFGLHAAVSF KLENIHMSRV DHVLEFFLPT ETKDVSEHKL 540 LIDGISSILQ KNCRNSWVIS GMELSEDNMD SVVRSEGAIS DRSLPASLDN GSFNTNGMII 600 ASDAVNATDH GIEIGVEAHE QDVGDQNSTF EAASTGITSI LQQKSRNSWK DFSEQLSGAN 660 FSSEVRIENF ETSDVRPAGI SDSYYSLNSS EVRKFCNISN PTSDGVEVQE AHDQEMGEQN 720 STCGAASNEI TSTLQKNPWK SWKDHSSEFM ELCNISNPAS DGEEVQEARD QEVEEQEFAF 780 VPEAPSPDNE EGGRGTSRLN ASARNKRRRT SEELKSSMQY LASSAASEVM RFPDSEVPYP 840 VLLNFFFDFL PPIVPY

Sequence ? help Back to Top

Protein Sequence Length: 856 aa Download sequence Send to blast

MDTSPLNKLV DCAKAIEGGN LNDADLLLKE IIASNESLSR ATKSLVKYYA EALVRRLYKL  60
YPRNLTPLIP SGTDQLPETD YPFSPFFCFG DFTTLDPSTG PISFRLTFVG PVLSIAADHT  120
QKTLERLHGE AERFAIDFEV RHLVANSAAD IVDSVLKLTR ASGDETIVVK WKFQLHKLLT  180
LTGASEKVLS KLRELKPEIM IIVEQEASHN GQNLLDCFSK SFQYYSIVFD SLDKDNVDIN  240
SDGVRRKVFW EMSFRRQICK LVAPGGTDHI ERHETFAYWQ DRLRRFGFRH YRFKPQSFSN  300
FCREQMPEYS WEEKDRHPQL RRKGIPLVFS SAWKPDPTQL NSVILTCWGE IIIIYAGSNM  360
ELDEENYSKF HENQLDDPHI MTQEIMWSEK CFSINQIAAS VEIYDILEYT CNVHNLPLAL  420
TWISDRRDCN VNSNGKLRIV ESACYLNDIT MEGFVEACGQ HHLEEGQGVA GKALQLNGMY  480
FIPDVSELSA DAYPFVCDAW EFGLHAAVSF KLENIHMSRV DHVLEFFLPT ETKDVSEHKL  540
LIDGISSILQ KNCRNSWVIS GMELSEDNMD SVVRSEGAIS DRSLPASLDN GSFNTNGMII  600
ASDAVNATDH GIEIGVEAHE QDVGDQNSTF EAASTGITSI LQQKSRNSWK DFSEQLSGAN  660
FSSEVRIENF ETSDVRPAGI SDSYYSLNSS EVRKFCNISN PTSDGVEVQE AHDQEMGEQN  720
STCGAASNEI TSTLQKNPWK SWKDHSSEFM ELCNISNPAS DGEEVQEARD QEVEEQEFAF  780
VPEAPSPDNE EGGRGTSRLN ASARNKRRRT SEELKSSMQY LASSAASEVM RFPDSEVPYP  840
VLLNFFFDFL PPIVPY

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011007369.1	0.0	PREDICTED: uncharacterized protein LOC105113066 isoform X1
TrEMBL	A0A2K1R7I7	0.0	A0A2K1R7I7_POPTR; Uncharacterized protein
STRING	POPTR_0017s04990.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF15862	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G14920.1	3e-47	GRAS family protein