PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021088.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CO-like
Protein Properties Length: 426aa    MW: 48285.1 Da    PI: 4.826
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021088.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box28.82.6e-091659340
     zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                 +r C+ + +k++++fC  ++ +lC+ C  + H+       H++v
  CCG021088.1 16 ARACDSCLRKRARWFCVADDAFLCQACDASVHSAnqlasrHQRV 59
                 578*****************************667888888876 PP
2CCT70.25.3e-24374417144
          CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                  Rea+++RYkeKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk++
  CCG021088.1 374 REARVMRYKEKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRT 417
                  9*****************************************87 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.9641461IPR000315B-box-type zinc finger
SMARTSM003361.4E-121461IPR000315B-box-type zinc finger
PfamPF006431.1E-71659IPR000315B-box-type zinc finger
CDDcd000211.70E-111761No hitNo description
PfamPF062031.7E-18374416IPR010402CCT domain
PROSITE profilePS5101716.112374416IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MISGRKAANA MGGKTARACD SCLRKRARWF CVADDAFLCQ ACDASVHSAN QLASRHQRVR  60
LETASSYRIS SSLNTDQDYS PPAWHQGFTR KARTPRHNSN SNKSLLVQKL LKDDREKVLN  120
PLPLVPEIGS EEEPNMAADE NEDQLLCRVP VFDPFAAKMC DIVTSEDGNM AVEVYGQEGA  180
CGLDNLPGFL PSDMDLAEFA ADVENLLGRE TDEEYHDTKD LELLDCSKGE DEGQFCFADK  240
VVKMKDEQEM ETIIDCHFDQ DFNMARESLL GWNFDYETLV DGDEEVEERK VPVPETEMMT  300
STEYKEMKRN VSLRLDYESV IIAWANQGCP WTTGSRPELN ADDSWTDSMG TSPKDVNNPY  360
GGLGSHTRGG DGEREARVMR YKEKRRTRLF SKKIRYEVRK LNAEKRPRMK GRFVKRTSLM  420
GTTDFP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1384400RRTRLFSKKIRYEVRKL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2130170.0AC213017.1 Populus trichocarpa clone POP051-F14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011016373.10.0PREDICTED: zinc finger protein CONSTANS-LIKE 16-like
TrEMBLA0A2K1XIE40.0A0A2K1XIE4_POPTR; Uncharacterized protein
STRINGPOPTR_0015s06480.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14733392
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.12e-91B-box type zinc finger protein with CCT domain