PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021046.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 481aa    MW: 55688.9 Da    PI: 9.5541
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021046.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH22.42.1e-07398417525
                  --SGGGGTS--TTTTT-SS-S CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaH 25 
                  lCr+fa+ G C+yG +CkF H
  CCG021046.1 398 LCRYFAQ-GRCHYGHNCKFVH 417
                  9******.************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.720.303.3E-887134IPR003034SAP domain
SuperFamilySSF689061.03E-688134No hitNo description
PfamPF020371.3E-6100133IPR003034SAP domain
PROSITE profilePS5010314.906393420IPR000571Zinc finger, CCCH-type
SMARTSM003560.0028393419IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6394418IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-6396421IPR000571Zinc finger, CCCH-type
PfamPF006424.9E-5397417IPR000571Zinc finger, CCCH-type
SMARTSM003569.8E-4420445IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.06E-6421444IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.2E-5423449IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.3424446IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 481 aa     Download sequence    Send to blast
MVTYKQKKPQ DEQEEEEVYS AESGGSDPDY GSDTDPSYSI FEETRSNLSR LSIKKKSKSR  60
VAKDLDLSFD EDPGEKETKL AEVDEKSYEE VQKIIQAGKL ERLKVEQCKV YLRKNKLRLT  120
GKKDILIQRI KEHQEILSGG GEKKYPISSF VLDCKGDACR GDIVMFDQNV YDKYNIASRS  180
AVGSPIGTRM VAGKIVQESY GAAKQQHTFT IEVLWSKGEN PLPPLHPLLI KGRNLYRMKT  240
LRQRWEDEGE RRNILLEKHL RGSLARSNRE TRVLEKEGRK MLRVERALKK EETNKSRSQL  300
NPRTSLNNGL SRMDQRQPLK CADRSPHRQG CEQPKLHANR GENDYRGQVP GNAVEYGDIQ  360
DDFCSRSPKF CRKPLASIHN SSPIRSPHRQ GGDQQIQLCR YFAQGRCHYG HNCKFVHESR  420
EGQLCRYFAL GRCFYGQDCK FVHESREGRE QRIEERGGPC SPRREEWLTT PRRLERRPYL  480
F
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826920.0AC182692.2 Populus trichocarpa clone Pop1-44B2, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036487.10.0PREDICTED: zinc finger CCCH domain-containing protein 62-like
TrEMBLA0A2K2B2U90.0A0A2K2B2U9_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116522224