PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG021012.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRF
Protein Properties Length: 422aa    MW: 47303 Da    PI: 7.0529
Description GRF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG021012.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRC78.85.1e-2577120144
          WRC   1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkske 44 
                  d+epgrCrRtDGKkWRCs++v++++k+CErH+hrgr+rsrk++e
  CCG021012.1  77 DPEPGRCRRTDGKKWRCSKEVYPDSKYCERHMHRGRNRSRKPVE 120
                  79***************************************986 PP
2QLQ582.9e-201346336
          QLQ  3 FTaaQlqlLksQilAyKyLaanqPvPpeLlqaiq 36
                 FTa+Q+++L++Q+l+yKy+++++PvPpeLl  ++
  CCG021012.1 13 FTATQWHELEHQALIYKYMVSGVPVPPELLYSVK 46
                 *****************************97775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM009511.1E-111147IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166621.9351247IPR014978Glutamine-Leucine-Glutamine, QLQ
PfamPF088806.5E-151345IPR014978Glutamine-Leucine-Glutamine, QLQ
PROSITE profilePS5166725.05777121IPR014977WRC domain
PfamPF088792.3E-2178120IPR014977WRC domain
PfamPF068141.1E-7362417IPR009637Lung seven transmembrane receptor-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0016021Cellular Componentintegral component of membrane
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MLNTTSARNS LLFTATQWHE LEHQALIYKY MVSGVPVPPE LLYSVKRSLE SSLASRLFPH  60
QPTGWVCFQA GVGRKADPEP GRCRRTDGKK WRCSKEVYPD SKYCERHMHR GRNRSRKPVE  120
LASTTTTAAA AAIPLTSINR NLYNNTVSPS SSSYSFSNLP SSMESEIYAH QDSSRSTFLY  180
PHSSSSGPPA GSCFSPQNST THNLFLDCGS SPHADKEYRY SHGIREYVDE RAFFPDALGS  240
ARGVQDSYNQ LTMSSYKGYS QSQFQSFANT SKEEQQQPGH HCFVLGTDII KSSATRSTKL  300
EKEPETQMPL HHFFGEWEPR DADSGLDLAS SSRPHDNGMF EMAFWYFDYA EFNETGIRPT  360
GIFVASEALE LVENVGAVCD FLVRPNLFLV LPVAFLDAFI IIWIFKSLSA TLSKLQVPGL  420
PF
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2175880.0AC217588.1 Populus trichocarpa clone POP047-P10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036429.10.0PREDICTED: growth-regulating factor 5-like
TrEMBLA0A2K2B2J20.0A0A2K2B2J2_POPTR; Uncharacterized protein
STRINGPOPTR_0003s06360.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF97443137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G13960.12e-60growth-regulating factor 5