PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020996.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 271aa    MW: 31449.6 Da    PI: 6.9953
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020996.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind114.95.3e-36251172103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+ +++++sw +++++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgFkkv +++         weF++++F+kg k+ll++i+
   CCG020996.1  25 FLTKTYQLVDDPLTDHVVSWGDDETTFVVWRPPEFARELLPNYFKHNNFSSFVRQLNTYGFKKVVTDR---------WEFANEHFRKGAKQLLSEIH 112
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
   CCG020996.1 113 RRKTS 117
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.101.3E-3716108IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.8E-5621114IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467856.94E-3322114IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000565.4E-192548IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.3E-3125114IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-196375IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406488IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000565.4E-197688IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MAFTVDRCEE MVFTVESQKA VPAPFLTKTY QLVDDPLTDH VVSWGDDETT FVVWRPPEFA  60
RELLPNYFKH NNFSSFVRQL NTYGFKKVVT DRWEFANEHF RKGAKQLLSE IHRRKTSQHQ  120
HQHYPDQATQ FLQSEDHGFG WIDPPFPSPK PCVDHILTAL SEDNQRLRRK NCMLLSELSH  180
MKNLYNDIIY FIQNHVKPVP YEQKAYDTVP KLIEPGSSCQ DQTICFGVQR AKNGVLGKHS  240
LTFSTEESSS PVKLFGVPLI DNKRLHPEAI E
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ldu_A1e-222111717123Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0140100.0KP014010.1 Populus simonii heat shock transcription factor B4c (HsfB4c) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036401.10.0PREDICTED: heat stress transcription factor B-4b-like
SwissprotQ9C6355e-84HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLB9HNI50.0B9HNI5_POPTR; Uncharacterized protein
STRINGPOPTR_0009s07220.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF16123393
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.12e-86heat shock transcription factor B4