PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG020771.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | Trihelix | ||||||||
Protein Properties | Length: 346aa MW: 38077.6 Da PI: 6.2004 | ||||||||
Description | Trihelix family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | trihelix | 92.1 | 5.7e-29 | 43 | 137 | 1 | 86 |
trihelix 1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 rWt+qe+l+Li+++r e+r+rrg+ +++p+W++vs++++++g++r+p+qC+++w+nl++++kkike+e + ++e++s +++ ++l+ CCG020771.1 43 RWTRQEILVLIQGKRVAENRVRRGRasgmgigsgQIEPKWASVSSYCKRHGVNRGPVQCRKRWSNLAGDFKKIKEWETSIREETESFWVMRNDLR 137 8**********************97778888888**********************************************9999999*9999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF13837 | 6.2E-12 | 43 | 133 | No hit | No description |
PROSITE profile | PS50090 | 6.4 | 43 | 109 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 7.8E-5 | 43 | 108 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050777 | Biological Process | negative regulation of immune response | ||||
GO:0071219 | Biological Process | cellular response to molecule of bacterial origin | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0042803 | Molecular Function | protein homodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MALEQQLNLT PTQNSVDGER TNGVDTNIRD GGDDGNKAPR LPRWTRQEIL VLIQGKRVAE 60 NRVRRGRASG MGIGSGQIEP KWASVSSYCK RHGVNRGPVQ CRKRWSNLAG DFKKIKEWET 120 SIREETESFW VMRNDLRRER KLPGFFDREV YDILDGGVGT VPGLALALAP SSTAAEAEAV 180 VEEVVFDSGR SAAAEDGLFS DFEQEEGGGS PEAVVKEVQP IKVAVTAGVA NPTPISEKQY 240 QPAPRASQAQ VPPNDKRPAT NPEMGSASHE ERKRKRFAMD GDEETVSLQS HLIDVLERNG 300 KMLTAQLEAQ NTNFQLDREQ RKDHADGLVA VLNKLANALG KIADKL |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00288 | DAP | Transfer from AT2G33550 | Download |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011036171.1 | 0.0 | PREDICTED: trihelix transcription factor GT-2 isoform X1 | ||||
Swissprot | Q8VZ20 | 1e-126 | ASR3_ARATH; Trihelix transcription factor ASR3 | ||||
TrEMBL | B9GMT2 | 0.0 | B9GMT2_POPTR; Trihelix family protein | ||||
STRING | POPTR_0001s13060.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2165 | 33 | 75 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33550.1 | 1e-118 | Trihelix family protein |
Publications ? help Back to Top | |||
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