PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020717.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family CAMTA
Protein Properties Length: 1189aa    MW: 132320 Da    PI: 5.8961
Description CAMTA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020717.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CG-1174.12e-54952093116
         CG-1   3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcy 99 
                  +e ++rwlk+ e++ iL+n++k+++t++++++p+sgsl+L+n++++++fr+DG++w+kkkdg++v E+he+LKvg+ve+l+cyYah+e+n++fqrr+y
  CCG020717.1  95 EEaQTRWLKPAEVVFILQNHDKYQFTEKPPQKPTSGSLFLFNKRVLKFFRRDGHNWRKKKDGRSVGEAHERLKVGNVEALNCYYAHGEQNQNFQRRSY 192
                  55599********************************************************************************************* PP

         CG-1 100 wlLeeelekivlvhyle 116
                  w+L++++e+ivlvhy++
  CCG020717.1 193 WMLDRAFEHIVLVHYRD 209
                  ***************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5143778.45490216IPR005559CG-1 DNA-binding domain
SMARTSM010763.0E-7393211IPR005559CG-1 DNA-binding domain
PfamPF038591.2E-4796209IPR005559CG-1 DNA-binding domain
Gene3DG3DSA:2.60.40.102.6E-9495586IPR013783Immunoglobulin-like fold
PfamPF018336.5E-9501584IPR002909IPT domain
SuperFamilySSF812961.82E-19501585IPR014756Immunoglobulin E-set
CDDcd001023.08E-7501585No hitNo description
Gene3DG3DSA:1.25.40.201.2E-14697793IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029716.228698790IPR020683Ankyrin repeat-containing domain
SuperFamilySSF484031.21E-15701792IPR020683Ankyrin repeat-containing domain
CDDcd002045.67E-13718790No hitNo description
PROSITE profilePS5008810.98731763IPR002110Ankyrin repeat
SMARTSM002480.0081731760IPR002110Ankyrin repeat
PfamPF136372.6E-6733790No hitNo description
SMARTSM002484500770799IPR002110Ankyrin repeat
SMARTSM0001517848870IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.352852878IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.43E-7857871IPR027417P-loop containing nucleoside triphosphate hydrolase
SMARTSM000150.81903925IPR000048IQ motif, EF-hand binding site
SuperFamilySSF525404.43E-7904955IPR027417P-loop containing nucleoside triphosphate hydrolase
PROSITE profilePS500967.95904933IPR000048IQ motif, EF-hand binding site
PfamPF006120.026906924IPR000048IQ motif, EF-hand binding site
SMARTSM000151.2E-4926948IPR000048IQ motif, EF-hand binding site
PROSITE profilePS500968.773927951IPR000048IQ motif, EF-hand binding site
PfamPF006126.2E-4929948IPR000048IQ motif, EF-hand binding site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 1189 aa     Download sequence    Send to blast
MPTTPVRRRL PEITPAGFAS LLLGMSLTLM LCGSVTFFIG FLLMPWVLGL VMVFYVAGIV  60
STISMLGRSL LCYATAPPSS PRKEIPGYDI NSLFEEAQTR WLKPAEVVFI LQNHDKYQFT  120
EKPPQKPTSG SLFLFNKRVL KFFRRDGHNW RKKKDGRSVG EAHERLKVGN VEALNCYYAH  180
GEQNQNFQRR SYWMLDRAFE HIVLVHYRDI TEGKPSPGSA AQLSPIFSYS PGTNTSQTQG  240
STSAISSVYE PYQSFSSPAS VDVSSGLGIK DNGVDRTAEL TSSANNEVTQ FFRRLEEQLS  300
LNEDSAEEIG PFGAEEGAIN DTKILEYVNN ISKEDQSKNL LHGSQYIVDY QSYGGLAGHQ  360
LERNNLAPLQ DAGDSGAYQQ PYSHYYTDGS EEPLPWNEGI ESYKTSSGIE YQEKTKSSLS  420
TEPAEEQENS YWINFNEPNV RNSSLLLPQE VENFELPAYA SVIETHENNS NFYAMLYDQD  480
HLGIPNEADS NLTVAQQQKF TIHEISPEWG YATEATKVII VGSFLCDPSE SSWMCMFGDI  540
EVPLQIIQEG VIRCESPPHH PGKVTLCITS GNRESCSEIR GFEYRAKDSS CAHCILSQTE  600
ATKSPDELLL LFRFVQMLSD CSLQRGDSVE MGIHLLRELK ADDDTWRDII EALLVGSGTS  660
SMTVDWLLQQ LLNDKLQQWL SSKSQEGHDQ PGCSFSKKEQ GIIHMVAGLG FEWALSPILS  720
HGISINFRDI NGWTALHWAA HFGREKMVAS LLASGASAGA VTDPSPQDPI GKTPASIAAT  780
RGHTGLAGYL SEVALTSHLS SLRLEESQLS IGSAEVQAER TLDSISKESF ASIDDQILLK  840
DTLAAARNAA LAAARIQSAF RAHSFRKRLQ REATSLDEYG ICAGEIQGLS TMSKMAFRNN  900
SHVINSAALS IQKKYRGWKG RKDFLELRQK VVKIQAHVRG YQIRRNYKII CWAVGILDKA  960
VLRWRRKGIG LRGFRNVMES IDDSEDEDIL KIFRKQKVDG AINEAVSRVL SMVKSPDARR  1020
QYHRTLKQYR QAKAELGGTS EPAASTSLVD ATEMENDLVP FQVEATSDLS SATEDVNSPA  1080
IREAVSKHGE EGPAYGGSRE NAAAEEIVKE LRKVRRQNFV THCLLSAMIV LTVAWQVSEV  1140
SLILKVKDGL RHPFKSFGSM LTGMLKDPRA DDQDPEKQQS EEFPVNVPL
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1470501e-134EF147050.1 Populus trichocarpa clone WS01226_M10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011036094.10.0PREDICTED: calmodulin-binding transcription activator 4-like
SwissprotQ9FYG20.0CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBLU5GPG60.0U5GPG6_POPTR; CAMTA family protein
STRINGPOPTR_0001s13700.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45482950
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67310.10.0Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains
Publications ? help Back to Top
  1. Benn G, et al.
    A key general stress response motif is regulated non-uniformly by CAMTA transcription factors.
    Plant J., 2014. 80(1): p. 82-92
    [PMID:25039701]
  2. Kidokoro S, et al.
    Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature.
    Plant Cell, 2017. 29(4): p. 760-774
    [PMID:28351986]