PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020621.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family bHLH
Protein Properties Length: 90aa    MW: 10026.6 Da    PI: 10.1576
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020621.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.63e-103764330
                 HHHHHHHHHHHHHHHHHHHHHHCTSCCC CS
          HLH  3 rahnerErrRRdriNsafeeLrellPka 30
                 ++h+e+ErrRR+riN  +++Lr l+P  
  CCG020621.1 37 KSHSEAERRRRERINAHLATLRGLVPCT 64
                 68************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.4423490IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.22E-83769IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.5E-83764IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-83864IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 90 aa     Download sequence    Send to blast
MVSQALVLDV EKGELLKAPA RIGKMGISEA KAFAALKSHS EAERRRRERI NAHLATLRGL  60
VPCTEKTLSN ELEHSSNPNL VTYNFKLLKE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14247ERRRRE
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2142846e-66AC214284.1 Populus trichocarpa clone POP076-F15, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011045926.11e-32PREDICTED: transcription factor bHLH30-like isoform X1
TrEMBLA0A2K1YGE94e-29A0A2K1YGE9_POPTR; Uncharacterized protein
STRINGPOPTR_0011s07440.15e-31(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.15e-08bHLH family protein