PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020438.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 422aa    MW: 46059.4 Da    PI: 6.6078
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020438.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.41e-07266286526
                  --SGGGGTS--TTTTT-SS-SS CS
      zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                  +C+ f++ GtC+ Gd C +aHg
  CCG020438.1 266 PCPEFRK-GTCQKGDYCEYAHG 286
                  8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484037.93E-1440154IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.208.7E-1554178IPR020683Ankyrin repeat-containing domain
PfamPF127966.8E-876145IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029714.23976151IPR020683Ankyrin repeat-containing domain
SMARTSM002480.02276106IPR002110Ankyrin repeat
CDDcd002041.20E-1278174No hitNo description
SMARTSM002480.012111143IPR002110Ankyrin repeat
PROSITE profilePS5008810.553111146IPR002110Ankyrin repeat
SMARTSM003561.9E-4261287IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.474261288IPR000571Zinc finger, CCCH-type
PfamPF006423.9E-5266286IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.1E-4266287IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-4293325IPR000571Zinc finger, CCCH-type
SMARTSM0035637296319IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.869296320IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 422 aa     Download sequence    Send to blast
MCTGSKSDLS PLNPIMEDES YSQKGSPLYK CSVLLELSAS DDLAGFKIEV EQKGLDIDEA  60
SYWYGRRIGL KKMGFEERTP LMIAALFGSG HVLKYIIETG KVNVNRVCGS DRVTALHCAV  120
AGGSDSSVGV VKLLLDASAD PNSVDGNGNK PGDLFAPSSK WLCNSRKKLI ELLLKGESLS  180
EDEEEKLIIT PQLAREGIEK KEYPLDVTLP DINNGIYGTD EFRMYSFKVK PCSRAYSHDW  240
TECPFVHPGE NARRRDPKKY PYSCVPCPEF RKGTCQKGDY CEYAHGVFES WLHPAQYRTR  300
LCKDETGCAR KVCFFAHKPE ELRPVYAATG SAMPSPRSTS SAVDMATLSS LALGSSSLSL  360
PGTSTPPVSP LAAASSSPKS GGLWQNKVSL TPPALQLPGS RLKTAFCARD LDLEMELLGL  420
ES
Functional Description ? help Back to Top
Source Description
UniProtInvolved in salt stress response. May positively modulate plant tolerance to salt stress. {ECO:0000269|PubMed:17609218}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress. {ECO:0000269|PubMed:17609218}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011035926.10.0PREDICTED: LOW QUALITY PROTEIN: zinc finger CCCH domain-containing protein 47-like
SwissprotQ9XEE61e-178C3H29_ARATH; Zinc finger CCCH domain-containing protein 29
TrEMBLA0A2K1YWF00.0A0A2K1YWF0_POPTR; Uncharacterized protein
STRINGPOPTR_0010s19520.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40140.21e-155C3H family protein