PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG020429.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

bHLH

Protein Properties

Length: 320aa MW: 35168.8 Da PI: 7.8686

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG020429.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	43.3	6.6e-14	69	115	3	54
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 ++h+++E+rRRdriN + Lr+l+Pk+ +K++Ka+ L A++++k+L CCG020429.1 69 KSHSQAEKRRRDRINAQLGILRKLIPKS-----EKMDKAALLGSAIDHVKDL 115 79***********************8.....8**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	15.478	66	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.7E-13	68	124	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	1.8E-15	69	118	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	1.7E-11	69	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	2.1E-12	72	121	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	6.57E-10	74	118	No hit	No description
Gene3D	G3DSA:3.30.70.260	4.8E-5	161	225	No hit	No description
CDD	cd04873	2.02E-6	162	198	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MEDHYPPCWP AAPAEANWVQ PSAAVYDESF LVPCPSHASD SASFQVYGFP SWPIPLQEAS 60 EDKAASSSKS HSQAEKRRRD RINAQLGILR KLIPKSEKMD KAALLGSAID HVKDLKQKAT 120 EISRTFTIPT EVDEVTVDCD VSQVTSPPST NKDKDNTFIR ASVCCDDRPE LFSELITVLK 180 GLRLTIVRAD IASVGGRVKS ILVLCSECSE EGSVSISTIK QSLNLVLSRI ASSSVPSNYR 240 IRSKRQRGWF HFNACGGESG GGCGSRGQRK GPGDGEERCT GKTDETCLRA IMQKTMQEEA 300 RIYFDGFMGI HLLTQSNHRK

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by salicylic acid (SA) treatment. {ECO:0000269\|PubMed:12679534}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035908.1	1e-180	PREDICTED: transcription factor bHLH51-like
Swissprot	Q9XEF0	5e-42	BH051_ARATH; Transcription factor bHLH51
TrEMBL	B9HSL8	1e-164	B9HSL8_POPTR; BHLH family protein
STRING	POPTR_0010s19400.1	1e-164	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF5796	33	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40200.1	2e-34	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]