PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG020422.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

G2-like

Protein Properties

Length: 362aa MW: 40653.4 Da PI: 9.2753

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG020422.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	101.9	4e-32	70	123	2	55
G2-like 2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 prlrWtp+LH +Fv+ave+LGG+e+AtPk +l++m++kgL+++hvkSHLQ+YR+ CCG020422.1 70 PRLRWTPDLHLCFVHAVERLGGQERATPKLVLQMMNIKGLSIAHVKSHLQMYRS 123 8****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	2.6E-30	66	125	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.096	66	126	IPR017930	Myb domain
SuperFamily	SSF46689	1.06E-14	68	125	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.5E-22	70	124	IPR006447	Myb domain, plants
Pfam	PF00249	1.6E-9	71	122	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 362 aa Download sequence Send to blast
MEGSDSFGGS KSSYSNKEVE QDEGDEEEVD KISFKSRNEG VSTSNSSVEE NEKKAASTGS 60 VRQYIRSKMP RLRWTPDLHL CFVHAVERLG GQERATPKLV LQMMNIKGLS IAHVKSHLQM 120 YRSKRSDEPN QGQGLFLEGG DRLIYNHSQL PVLQNFNQRS SCNLRYGNAS WRGHDHQMYS 180 PYKEGTALNR FKHGLYGSVS ERLVIGRNNH NSLNYDSSIN IPSLNVQATS RTHQFLEGVK 240 LFQVSRREES RPGSMESNFI AKLQERSGID QKECLNTTSS ADKNWRTIQE MQKGSKRKTS 300 DSDCNLELNL ALKLSTKDED GLQKCVADGS LSLSLSSKLG RSMEGDGSRK HARMASTLHL 360 TL

Sequence ? help Back to Top

Protein Sequence Length: 362 aa Download sequence Send to blast

MEGSDSFGGS KSSYSNKEVE QDEGDEEEVD KISFKSRNEG VSTSNSSVEE NEKKAASTGS  60
VRQYIRSKMP RLRWTPDLHL CFVHAVERLG GQERATPKLV LQMMNIKGLS IAHVKSHLQM  120
YRSKRSDEPN QGQGLFLEGG DRLIYNHSQL PVLQNFNQRS SCNLRYGNAS WRGHDHQMYS  180
PYKEGTALNR FKHGLYGSVS ERLVIGRNNH NSLNYDSSIN IPSLNVQATS RTHQFLEGVK  240
LFQVSRREES RPGSMESNFI AKLQERSGID QKECLNTTSS ADKNWRTIQE MQKGSKRKTS  300
DSDCNLELNL ALKLSTKDED GLQKCVADGS LSLSLSSKLG RSMEGDGSRK HARMASTLHL  360
TL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	9e-18	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	9e-18	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	9e-18	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	9e-18	71	125	3	57	Protein PHOSPHATE STARVATION RESPONSE 1
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Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00301	DAP	Transfer from AT2G40260	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011035900.1	0.0	PREDICTED: putative two-component response regulator ARR21
TrEMBL	B9HHT8	0.0	B9HHT8_POPTR; Uncharacterized protein
STRING	POPTR_0010s19310.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF2378	34	82

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G40260.1	6e-53	G2-like family protein