PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG020277.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Trihelix

Protein Properties

Length: 462aa MW: 53525.6 Da PI: 4.9261

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG020277.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	30.5	9.6e-10	44	124	1	85
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 +Wt +e l L++ +e++ ++ + ++W+ + +++ + r+ +qC+ kw++l ++y ik+++k+ +s+s ++ +l CCG020277.1 44 EWTTKEALILVNEIAAVEKDCLKALSTYQKWKIIVDNCVVLDVARNLNQCRTKWNSLVNEYNLIKNWDKESESRS----DFYWSL 124 5********************************************************************964433....466666 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.4E-8	43	125	No hit	No description
PROSITE profile	PS50090	6.609	45	101	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 462 aa Download sequence Send to blast
MAEVQMEVIV NKKKRRKEQR ESKNNNQLRV SSSTPRTRSQ VSPEWTTKEA LILVNEIAAV 60 EKDCLKALST YQKWKIIVDN CVVLDVARNL NQCRTKWNSL VNEYNLIKNW DKESESRSDF 120 YWSLESERRK EFGLPENFND EVYRAIDDYM WCHKEHPDTD PDPDPDTDSE KPDLLHAITN 180 PGTKKQRWRS KSLKTPMEKT THKCCSEDNS QTIYAEEKPQ ERCVEENSQI YCTVEKPQRV 240 HAEEEHQESQ VLESTQIYDA EGKLQTIHAE EDPQESCAEE EPHTIHAEEE PEESPAGGHP 300 QPCCSKEKPQ TIHLEEETQK RYLEENHQTS CTNEKPQSIL AETQLQESHM EEKPQKSCRK 360 ENSQNAHGDE KPKIHRGCKK KMPSTEQMKQ MMVEKLHENA EMIQAVVNGN FPEMADLEAA 420 DSKNIEGFKT DLIRSQGDKL IACLQNIVNS ISQFPCLLQE CD

Sequence ? help Back to Top

Protein Sequence Length: 462 aa Download sequence Send to blast

MAEVQMEVIV NKKKRRKEQR ESKNNNQLRV SSSTPRTRSQ VSPEWTTKEA LILVNEIAAV  60
EKDCLKALST YQKWKIIVDN CVVLDVARNL NQCRTKWNSL VNEYNLIKNW DKESESRSDF  120
YWSLESERRK EFGLPENFND EVYRAIDDYM WCHKEHPDTD PDPDPDTDSE KPDLLHAITN  180
PGTKKQRWRS KSLKTPMEKT THKCCSEDNS QTIYAEEKPQ ERCVEENSQI YCTVEKPQRV  240
HAEEEHQESQ VLESTQIYDA EGKLQTIHAE EDPQESCAEE EPHTIHAEEE PEESPAGGHP  300
QPCCSKEKPQ TIHLEEETQK RYLEENHQTS CTNEKPQSIL AETQLQESHM EEKPQKSCRK  360
ENSQNAHGDE KPKIHRGCKK KMPSTEQMKQ MMVEKLHENA EMIQAVVNGN FPEMADLEAA  420
DSKNIEGFKT DLIRSQGDKL IACLQNIVNS ISQFPCLLQE CD

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	11	15	KKKRR
2	11	16	KKKRRK
3	12	16	KKRRK

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF147466	0.0	EF147466.1 Populus trichocarpa clone WS01231_H23 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011006656.1	0.0	PREDICTED: uncharacterized protein LOC105112613 isoform X1
TrEMBL	A0A2K2A9F8	0.0	A0A2K2A9F8_POPTR; Uncharacterized protein
STRING	POPTR_0006s29340.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF6732	26	33

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G31270.1	2e-41	sequence-specific DNA binding transcription factors