PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG020195.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MIKC_MADS
Protein Properties Length: 213aa    MW: 24896.6 Da    PI: 9.7985
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG020195.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF83.21.6e-26959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+i++ + rqvtfskRr g++KKA+ELS+LCdae+a+++fs +gkl+eys+
  CCG020195.1  9 KKIDDAIARQVTFSKRRRGLFKKAYELSTLCDAEIALMVFSASGKLFEYSN 59
                 689**********************************************95 PP
2K-box36.42.1e-13931562184
        K-box  21 lakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkke 84 
                  +a L+kei +  re+Rh+ GedL+ L+l+eL++Le+ +++sl ++ + K e l+e+ ++l+++ 
  CCG020195.1  93 YATLNKEIAEKTRELRHVRGEDLQGLNLEELHKLEKLIKTSLCRVVEEKGEQLVEENRRLKQQV 156
                  788999999999**********************************************999875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006629.408161IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.88E-28269IPR002100Transcription factor, MADS-box
PROSITE patternPS003500357IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-26323IPR002100Transcription factor, MADS-box
CDDcd002651.92E-36368No hitNo description
PfamPF003193.3E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-262338IPR002100Transcription factor, MADS-box
PRINTSPR004041.4E-263859IPR002100Transcription factor, MADS-box
PROSITE profilePS512978.1686213IPR002487Transcription factor, K-box
PfamPF014862.8E-993157IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 213 aa     Download sequence    Send to blast
MTRRKIEIKK IDDAIARQVT FSKRRRGLFK KAYELSTLCD AEIALMVFSA SGKLFEYSNS  60
SVGQVLERRN LHLKNIDMFG QPSLELQPDG AVYATLNKEI AEKTRELRHV RGEDLQGLNL  120
EELHKLEKLI KTSLCRVVEE KGEQLVEENR RLKQQVRLRD PFRIFSPFLS HTLNFEFSFY  180
LAGDEFISRP KAFARTRQVI RFSGDQYQEH ELS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-19166166MEF2 CHIMERA
6byy_B1e-19166166MEF2 CHIMERA
6byy_C1e-19166166MEF2 CHIMERA
6byy_D1e-19166166MEF2 CHIMERA
6bz1_A1e-19166166MEF2 CHIMERA
6bz1_B1e-19166166MEF2 CHIMERA
6bz1_C1e-19166166MEF2 CHIMERA
6bz1_D1e-19166166MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011023055.11e-103PREDICTED: MADS-box protein SVP-like isoform X1
RefseqXP_011023056.11e-103PREDICTED: MADS-box protein SVP-like isoform X1
RefseqXP_011023057.11e-104PREDICTED: MADS-box protein JOINTLESS-like isoform X2
SwissprotQ9FUY68e-60JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A2K1ZSW76e-95A0A2K1ZSW7_POPTR; Uncharacterized protein
STRINGXP_010254524.11e-64(Nelumbo nucifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22540.12e-43MIKC_MADS family protein
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]