PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG020034.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 328aa MW: 36821.7 Da PI: 4.5725 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 59.9 | 4e-19 | 60 | 113 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k CCG020034.1 60 KKRRLSGDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 113 566899***********************************************9 PP | |||||||
2 | HD-ZIP_I/II | 130.1 | 8.6e-42 | 59 | 151 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy +Lk++yd+lk++ +++++++e+L +e++e CCG020034.1 59 EKKRRLSGDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGVLKANYDSLKHNFDAIQQDNEALLKEIRE 151 69*************************************************************************************999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.41E-19 | 47 | 117 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.491 | 55 | 115 | IPR001356 | Homeobox domain |
SMART | SM00389 | 7.4E-18 | 58 | 119 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 2.2E-16 | 60 | 113 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.80E-16 | 60 | 116 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 3.0E-20 | 62 | 122 | IPR009057 | Homeodomain-like |
PRINTS | PR00031 | 9.5E-6 | 86 | 95 | IPR000047 | Helix-turn-helix motif |
PROSITE pattern | PS00027 | 0 | 90 | 113 | IPR017970 | Homeobox, conserved site |
PRINTS | PR00031 | 9.5E-6 | 95 | 111 | IPR000047 | Helix-turn-helix motif |
Pfam | PF02183 | 6.3E-19 | 115 | 156 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
MKRSLGSSDS LGALMSICPS AEERSPRNHT HVYSREFQSM LDGLDEEGCV EEAGGHVTEK 60 KRRLSGDQVK ALEKNFEVEN KLEPERKVKL AQELGLQPRQ VAVWFQNRRA RWKTKQLERD 120 YGVLKANYDS LKHNFDAIQQ DNEALLKEIR ELKAKLNEEN AESNVSIKEE LILAESEDKM 180 PEEDTPALLD SVAASATKEL NYETFNNHSS INIGLGASLF PDFKDGSSDS DSSAILNEDN 240 SPNPAISSSG ILQSQLMMSP PPSSSLRFNC SASSSSPSSM NCFQFSKPYQ TQFVKLEEHN 300 FFSSEEACNF FSDEQPPSLP WYSSDQWN |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 107 | 115 | RRARWKTKQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that may act as growth regulators in response to water deficit. Interacts with the core sequence 5'-CAATTATTA-3' of promoters in response to ABA and in an ABI1-dependent manner. Involved in the negative regulation of the ABA signaling pathway. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By water deficit, by abscisic acid (ABA) and by salt stress. Self expression regulation. {ECO:0000269|PubMed:10527431, ECO:0000269|PubMed:12065416, ECO:0000269|PubMed:16055682}. |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EF147945 | 0.0 | EF147945.1 Populus trichocarpa clone WS0126_C14 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011022832.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-6-like | ||||
Swissprot | P46668 | 5e-81 | ATHB6_ARATH; Homeobox-leucine zipper protein ATHB-6 | ||||
TrEMBL | A9PHT9 | 0.0 | A9PHT9_POPTR; HD-ZIP family protein | ||||
STRING | POPTR_0007s05010.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1868 | 34 | 89 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G22430.1 | 1e-81 | homeobox protein 6 |
Publications ? help Back to Top | |||
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