PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | CCG019976.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
|
||||||||
Family | GRAS | ||||||||
Protein Properties | Length: 105aa MW: 12029.2 Da PI: 5.7666 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 44.6 | 2.3e-14 | 16 | 100 | 175 | 261 |
GRAS 175 pfefnvlvakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleal 261 +f+ + + a++ + ++L++k+ +Ea++V++ ++lh+l + +++le+ vL+ +k+l+ +++v+veqea++ns++ l+r+++++ CCG019976.1 16 DFKLDHVFANTAGIV-ESTLNLKRtieKEAIVVKWEFELHKLISMPGALEK----VLSKLKELRLEIMVIVEQEANYNSPEILDRLAQSF 100 577777555555544.67788887778****************88888888....*******************************9986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 9.769 | 1 | 105 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 8.1E-12 | 16 | 100 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 105 aa Download sequence Send to blast |
MDRVLAIEAK TLRPTDFKLD HVFANTAGIV ESTLNLKRTI EKEAIVVKWE FELHKLISMP 60 GALEKVLSKL KELRLEIMVI VEQEANYNSP EILDRLAQSF PINIL |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_011007376.1 | 2e-52 | PREDICTED: uncharacterized protein LOC105113071 | ||||
TrEMBL | A0A2K1ZTT2 | 9e-50 | A0A2K1ZTT2_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0007s01550.1 | 6e-50 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF17902 | 3 | 7 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G14920.1 | 2e-16 | GRAS family protein |