PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019946.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 132aa    MW: 15263.7 Da    PI: 8.5253
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019946.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B335.81.4e-11796188
                 EEEE-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
           B3  1 ffkvltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88
                 f k+l+ps+v+    l++p + +e++   +g     +     d + + W++ l+ r+++ +   ++l++ W +Fv+++gL + D vvF +++++
  CCG019946.1  7 FSKKLKPSHVSHA--LSIPIDVLEAFpipDGA--HMMNFEAVDATDNAWRFCLSTRRTGAHpkpVLLRSSWHRFVEQKGLVTEDRVVFFMERNE 96
                 7899988888754..9*********9776444..344566668999*******88777777899***********************9877654 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-14399IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-133101IPR015300DNA-binding pseudobarrel domain
CDDcd100174.24E-10596No hitNo description
PfamPF023621.4E-8796IPR003340B3 DNA binding domain
SMARTSM010190.00667112IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MAQVHLFSKK LKPSHVSHAL SIPIDVLEAF PIPDGAHMMN FEAVDATDNA WRFCLSTRRT  60
GAHPKPVLLR SSWHRFVEQK GLVTEDRVVF FMERNEANDM LRRYTVRAQR KVMTLMGQDV  120
WVDVEDLPLY GL
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165931e-178AC216593.1 Populus trichocarpa clone POP016-L16, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011007873.19e-80PREDICTED: uncharacterized protein LOC105113408
TrEMBLA0A3N7H3I51e-82A0A3N7H3I5_POPTR; Uncharacterized protein
STRINGcassava4.1_027512m1e-47(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1390729