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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | CCG019944.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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| Family | B3 | ||||||||
| Protein Properties | Length: 119aa MW: 13861.7 Da PI: 7.5619 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 37.1 | 5.7e-12 | 4 | 90 | 1 | 88 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrs 88
f k+lt d+ + r+++p +++e+ gg+ +s++l ++d+ g+ +++ +k+ g+ l+ GW++Fv + gL++gD+vv+++++++
CCG019944.1 4 FSKALT--DTDVRFRFSFPTHCLEHLdfGGN--NSVDLHVKDSCGELRVIRC--WKRNGGydkPELRMGWRDFVADYGLRVGDMVVLHREDDH 90
667774..44455678***999966698766..799*********9999999..5555554557899*********************76654 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 7.26E-13 | 3 | 91 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.98E-14 | 3 | 102 | No hit | No description |
| Gene3D | G3DSA:2.40.330.10 | 7.8E-14 | 3 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
| Pfam | PF02362 | 5.3E-9 | 5 | 91 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 119 aa Download sequence Send to blast |
MQIFSKALTD TDVRFRFSFP THCLEHLDFG GNNSVDLHVK DSCGELRVIR CWKRNGGYDK 60 PELRMGWRDF VADYGLRVGD MVVLHREDDH NLGSQFRIEA KRSIKLFGKE DWGEVTRAN |
| Annotation -- Nucleotide ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | |||
| GenBank | AC210344 | 1e-157 | AC210344.1 Populus trichocarpa clone POP100-P10, complete sequence. | |||
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_006385207.1 | 8e-76 | uncharacterized protein LOC18096617 | ||||
| Refseq | XP_024452702.1 | 8e-76 | uncharacterized protein LOC112326845 | ||||
| TrEMBL | U5GLC8 | 2e-74 | U5GLC8_POPTR; Uncharacterized protein | ||||
| STRING | POPTR_0003s01170.1 | 3e-75 | (Populus trichocarpa) | ||||
| Orthologous Group ? help Back to Top | |||
|---|---|---|---|
| Lineage | Orthologous Group ID | Taxa Number | Gene Number |
| Fabids | OGEF12594 | 4 | 14 |
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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