PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019859.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 342aa    MW: 37143.2 Da    PI: 8.7749
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019859.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof124.33.8e-393292262
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                 +e+alkcprCds ntkfCyynnysl+qPr+fCk+CrryWtkGGalrnvP Ggg+rknkk +
  CCG019859.1 32 QEEALKCPRCDSPNTKFCYYNNYSLTQPRHFCKTCRRYWTKGGALRNVPFGGGCRKNKKIK 92
                 57899*****************************************************976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074781.0E-263090IPR003851Zinc finger, Dof-type
PfamPF027016.0E-333490IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1613690IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103874IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010052Biological Processguard cell differentiation
GO:0010118Biological Processstomatal movement
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1902066Biological Processregulation of cell wall pectin metabolic process
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MMAPDNLQAK QAPIDDNQIT TSNRKTTTTR PQEEALKCPR CDSPNTKFCY YNNYSLTQPR  60
HFCKTCRRYW TKGGALRNVP FGGGCRKNKK IKSSSRLSSD SSGSSEIGGF NFFHGLSPAT  120
KFNLGGLSLP RLNLSPNGIY NHFPSSGEIS ATSEAAVSIT SPRFRLDPSV SSTAGYGSLM  180
GLSYPLTSVS SGFCGAIQEN IGGASMNVNT NLASSIESLS CINQDLHWKL QQQRLAMLFG  240
TGKNHRDDST VSTAPIENHV QKLQPIMFEN LEISKPQVCA AGNSRKDGAT SGDPATEWFF  300
GNSYDQLTAT PTNRSNNGNN DNTGNWNGVQ AWGDLHQYSA LP
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006491.10.0PREDICTED: dof zinc finger protein DOF5.7-like
TrEMBLA0A3S9LK580.0A0A3S9LK58_POPTO; Dof-type zinc finger DNA-binding family protein
STRINGPOPTR_0005s19310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF38543460
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G65590.12e-60Dof family protein