PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019721.1

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

Nin-like

Protein Properties

Length: 500aa MW: 56085.3 Da PI: 4.9757

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019721.1	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	94.7	6.5e-30	183	234	1	52
RWP-RK 1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 aek+isl++l+kyFs+++kdAAk++gvc+T+LKriCRqyGI+RWP+Rkik++ CCG019721.1 183 AEKTISLQVLRKYFSGSLKDAAKSIGVCPTTLKRICRQYGINRWPSRKIKKV 234 589***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	16.768	171	254	IPR003035	RWP-RK domain
Pfam	PF02042	8.6E-25	186	234	IPR003035	RWP-RK domain
SuperFamily	SSF54277	3.6E-22	391	485	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-19	398	480	No hit	No description
SMART	SM00666	1.5E-20	401	484	IPR000270	PB1 domain
PROSITE profile	PS51745	18.498	401	484	IPR000270	PB1 domain
CDD	cd06407	1.18E-33	402	483	No hit	No description
Pfam	PF00564	2.3E-13	402	481	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 500 aa Download sequence Send to blast
MDLNFTDELM VQGYWCERSD GVNFFEPEPS ISSVLYDPSP YLPCMGSGHF SINTHDLTYQ 60 EEAENSLENP PPVYSETEEQ VIETITTPVH SESSQPESNE LVPEFCESWA CLKQEPEEEE 120 MFTETADWND NDLDLFREQE FSELGKLRQN PEHCTVESGQ DSYVPWSNLL GSRKKGKKSQ 180 TKAEKTISLQ VLRKYFSGSL KDAAKSIGVC PTTLKRICRQ YGINRWPSRK IKKVNHSLRK 240 LQVVVDSVMG AQGLIEVDSF YTAFPELSSP NYSGHNPFSS FKITDYSKES NPKPENHLFI 300 PEGTDSKSQS SLSSQNSGLS ISHGQKQLTR TANGSSTGHA SAVEDPVEAL KRTCSKSEIN 360 SLNQEEFAKA KSHETLGQHQ NLGTQARLAT SNSQGLQDGG AFRVKATFGH ENIRFSLQAN 420 WGFSDLRREI AKRFDIYDFS RIGLKYLDNE HESVLLTCDA DLEECKDLLG LSQSRTIKIT 480 LYPVSIPILG SAFSSSRDLF

Sequence ? help Back to Top

Protein Sequence Length: 500 aa Download sequence Send to blast

MDLNFTDELM VQGYWCERSD GVNFFEPEPS ISSVLYDPSP YLPCMGSGHF SINTHDLTYQ  60
EEAENSLENP PPVYSETEEQ VIETITTPVH SESSQPESNE LVPEFCESWA CLKQEPEEEE  120
MFTETADWND NDLDLFREQE FSELGKLRQN PEHCTVESGQ DSYVPWSNLL GSRKKGKKSQ  180
TKAEKTISLQ VLRKYFSGSL KDAAKSIGVC PTTLKRICRQ YGINRWPSRK IKKVNHSLRK  240
LQVVVDSVMG AQGLIEVDSF YTAFPELSSP NYSGHNPFSS FKITDYSKES NPKPENHLFI  300
PEGTDSKSQS SLSSQNSGLS ISHGQKQLTR TANGSSTGHA SAVEDPVEAL KRTCSKSEIN  360
SLNQEEFAKA KSHETLGQHQ NLGTQARLAT SNSQGLQDGG AFRVKATFGH ENIRFSLQAN  420
WGFSDLRREI AKRFDIYDFS RIGLKYLDNE HESVLLTCDA DLEECKDLLG LSQSRTIKIT  480
LYPVSIPILG SAFSSSRDLF

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KX056268	7e-39	KX056268.1 Citrus trifoliata transcription factor NLP2 mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011030336.1	0.0	PREDICTED: protein NLP2-like
Refseq	XP_011030337.1	0.0	PREDICTED: protein NLP2-like
TrEMBL	A0A2K2C5N6	0.0	A0A2K2C5N6_POPTR; Uncharacterized protein
STRING	POPTR_0001s30040.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF28226	3	3

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G17150.1	3e-89	Nin-like family protein