PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG019624.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 122aa MW: 14446.9 Da PI: 11.2058 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 31 | 4.4e-10 | 9 | 90 | 4 | 83 |
E-..-HHHHTT-EE--HHH.HTT...---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEE CS B3 4 vltpsdvlksgrlvlpkkfaeeh...ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFk 83 +++ +++r+ +p+k +e++ g+ + + + +d+ g++W +k+++r+ ++ ++++ W+++++++gLk gD v + CCG019624.1 9 SV-SKSDATNNRMEFPRKSLENFpipAGQ--NYFNFVAMDTLGQRWGFKVSIRNVGRYkkPWMSGQWRRYAREKGLKKGDRVKLI 90 44.455556678********888877444..4578999************984444334599******************88765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 8.755 | 5 | 107 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 3.2E-12 | 6 | 90 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 3.73E-11 | 7 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 3.58E-11 | 8 | 113 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 122 aa Download sequence Send to blast |
MEKVAMEKSV SKSDATNNRM EFPRKSLENF PIPAGQNYFN FVAMDTLGQR WGFKVSIRNV 60 GRYKKPWMSG QWRRYAREKG LKKGDRVKLI MHVEGNAVRS YRIMAERKLT MRIWIPVEDF 120 AR |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011016151.1 | 2e-86 | PREDICTED: uncharacterized protein LOC105119681 | ||||
TrEMBL | U7DZ15 | 2e-77 | U7DZ15_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0183s00210.1 | 4e-78 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF23094 | 2 | 3 |