PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019614.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 461aa    MW: 51689 Da    PI: 5.0032
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019614.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS281.72.2e-86444412373
         GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 
                  ++lLl+cA a++++d +l+q++++ l++ as  gdp+qRl++ f++AL +r ++ +++ ++   +s+ +++++s +   l +++++ P+++f++ + N
  CCG019614.1  44 EKLLLHCASALEHNDGTLVQQVMWVLNNVASLVGDPNQRLTSWFLRALVSRASKVCPTAMDFDGSSTIRRRQMSVT--ELAVYVDLIPWHRFGFCASN 139
                  689***************************************************9999998777777765554444..33469*************** PP

         GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl............. 181
                  +aI +a+eg ++vHi+Df+i++++QWp+L++aLa+RpegppslRiT+     s+    + + ee+g rL++fA+  +vpfefnv+             
  CCG019614.1 140 SAIFKAIEGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPTCRPSVppfLNVSSEEVGLRLSNFAKFRDVPFEFNVMadpsylasteimp 237
                  **********************************************977655557789999*******************************999998 PP

         GRAS 182 ........vakrledleleeLrvkpgEalaVnlvlqlhrll.....desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266
                           ++ l+ l+++ L+++ +Eal++n++  l +l       +sv+ +s rd++L++vk  +P +v+vv++++d++++s+  r++ +++y + 
  CCG019614.1 238 kessqdfhFESLLNHLTPSVLNLRDDEALVINCQNWLRYLSnieqkGSSVQDSSLRDAFLRTVKAFNPCIVIVVDEDSDLSAPSLSSRIATCFNYLWI 335
                  888777755557778899999*************999988755444456666669******************************************* PP

         GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363
                   fd+le+ lp++s++ri +E   +g +i+n+++ eg +r+er e   k ++r+++aGF +vp+ e++  ++++ll++++ ++g++  ee++ l+l+Wk
  CCG019614.1 336 PFDALETFLPKDSSQRIEYESD-IGHKIENIISFEGLQRIERLEPGIKVSQRMKNAGFLSVPFCEDTIGEVRSLLEEHAsGWGMKR-EEDHMLMLTWK 431
                  **********************.********************************************************5555543.6678899**** PP

         GRAS 364 drpLvsvSaW 373
                  +++ v+++aW
  CCG019614.1 432 GHSSVFATAW 441
                  ********** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098542.35617422IPR005202Transcription factor GRAS
PfamPF035147.6E-8444441IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
METELRGNIT SISLQNPSLF NTPQSSLSGA LNGCLGSLDG ACIEKLLLHC ASALEHNDGT  60
LVQQVMWVLN NVASLVGDPN QRLTSWFLRA LVSRASKVCP TAMDFDGSST IRRRQMSVTE  120
LAVYVDLIPW HRFGFCASNS AIFKAIEGYS KVHILDFSIT HCMQWPTLID ALAKRPEGPP  180
SLRITVPTCR PSVPPFLNVS SEEVGLRLSN FAKFRDVPFE FNVMADPSYL ASTEIMPKES  240
SQDFHFESLL NHLTPSVLNL RDDEALVINC QNWLRYLSNI EQKGSSVQDS SLRDAFLRTV  300
KAFNPCIVIV VDEDSDLSAP SLSSRIATCF NYLWIPFDAL ETFLPKDSSQ RIEYESDIGH  360
KIENIISFEG LQRIERLEPG IKVSQRMKNA GFLSVPFCED TIGEVRSLLE EHASGWGMKR  420
EEDHMLMLTW KGHSSVFATA WVPSDLQDKL CLDLMINDKE M
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_B1e-551644465475Protein SHORT-ROOT
5b3h_B3e-561644411421Protein SHORT-ROOT
5b3h_E3e-561644411421Protein SHORT-ROOT
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006405.10.0PREDICTED: scarecrow-like protein 32
TrEMBLU5FN460.0U5FN46_POPTR; Uncharacterized protein
STRINGPOPTR_0017s06900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100743142
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49950.11e-125GRAS family protein