PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG019614.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | GRAS | ||||||||
Protein Properties | Length: 461aa MW: 51689 Da PI: 5.0032 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 281.7 | 2.2e-86 | 44 | 441 | 2 | 373 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaN 99 ++lLl+cA a++++d +l+q++++ l++ as gdp+qRl++ f++AL +r ++ +++ ++ +s+ +++++s + l +++++ P+++f++ + N CCG019614.1 44 EKLLLHCASALEHNDGTLVQQVMWVLNNVASLVGDPNQRLTSWFLRALVSRASKVCPTAMDFDGSSTIRRRQMSVT--ELAVYVDLIPWHRFGFCASN 139 689***************************************************9999998777777765554444..33469*************** PP GRAS 100 qaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg...skeeleetgerLakfAeelgvpfefnvl............. 181 +aI +a+eg ++vHi+Df+i++++QWp+L++aLa+RpegppslRiT+ s+ + + ee+g rL++fA+ +vpfefnv+ CCG019614.1 140 SAIFKAIEGYSKVHILDFSITHCMQWPTLIDALAKRPEGPPSLRITVPTCRPSVppfLNVSSEEVGLRLSNFAKFRDVPFEFNVMadpsylasteimp 237 **********************************************977655557789999*******************************999998 PP GRAS 182 ........vakrledleleeLrvkpgEalaVnlvlqlhrll.....desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysa 266 ++ l+ l+++ L+++ +Eal++n++ l +l +sv+ +s rd++L++vk +P +v+vv++++d++++s+ r++ +++y + CCG019614.1 238 kessqdfhFESLLNHLTPSVLNLRDDEALVINCQNWLRYLSnieqkGSSVQDSSLRDAFLRTVKAFNPCIVIVVDEDSDLSAPSLSSRIATCFNYLWI 335 888777755557778899999*************999988755444456666669******************************************* PP GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrveeesgslvlgWk 363 fd+le+ lp++s++ri +E +g +i+n+++ eg +r+er e k ++r+++aGF +vp+ e++ ++++ll++++ ++g++ ee++ l+l+Wk CCG019614.1 336 PFDALETFLPKDSSQRIEYESD-IGHKIENIISFEGLQRIERLEPGIKVSQRMKNAGFLSVPFCEDTIGEVRSLLEEHAsGWGMKR-EEDHMLMLTWK 431 **********************.********************************************************5555543.6678899**** PP GRAS 364 drpLvsvSaW 373 +++ v+++aW CCG019614.1 432 GHSSVFATAW 441 ********** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 42.356 | 17 | 422 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 7.6E-84 | 44 | 441 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 461 aa Download sequence Send to blast |
METELRGNIT SISLQNPSLF NTPQSSLSGA LNGCLGSLDG ACIEKLLLHC ASALEHNDGT 60 LVQQVMWVLN NVASLVGDPN QRLTSWFLRA LVSRASKVCP TAMDFDGSST IRRRQMSVTE 120 LAVYVDLIPW HRFGFCASNS AIFKAIEGYS KVHILDFSIT HCMQWPTLID ALAKRPEGPP 180 SLRITVPTCR PSVPPFLNVS SEEVGLRLSN FAKFRDVPFE FNVMADPSYL ASTEIMPKES 240 SQDFHFESLL NHLTPSVLNL RDDEALVINC QNWLRYLSNI EQKGSSVQDS SLRDAFLRTV 300 KAFNPCIVIV VDEDSDLSAP SLSSRIATCF NYLWIPFDAL ETFLPKDSSQ RIEYESDIGH 360 KIENIISFEG LQRIERLEPG IKVSQRMKNA GFLSVPFCED TIGEVRSLLE EHASGWGMKR 420 EEDHMLMLTW KGHSSVFATA WVPSDLQDKL CLDLMINDKE M |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_B | 1e-55 | 16 | 444 | 65 | 475 | Protein SHORT-ROOT |
5b3h_B | 3e-56 | 16 | 444 | 11 | 421 | Protein SHORT-ROOT |
5b3h_E | 3e-56 | 16 | 444 | 11 | 421 | Protein SHORT-ROOT |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006405.1 | 0.0 | PREDICTED: scarecrow-like protein 32 | ||||
TrEMBL | U5FN46 | 0.0 | U5FN46_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0017s06900.1 | 0.0 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF10074 | 31 | 42 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49950.1 | 1e-125 | GRAS family protein |