PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | CCG019567.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family | B3 | ||||||||
Protein Properties | Length: 121aa MW: 13491.8 Da PI: 11.0545 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 40.2 | 6.2e-13 | 5 | 91 | 2 | 87 |
EEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SS CS B3 2 fkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgr 87 kvl + + ++rl++p f+++ gg ++ + d sgr+W++++++r+++ v+++GW +v+++ Lk+gD v F +++ CCG019567.1 5 SKVLRK--TDIKKRLSVPTGFLSSLpsfkGGG--HAVDFQAVDGSGRVWTFRCSIRRNGHPkPVISRGWLAYVHSKSLKVGDKVQFLKEKN 91 566633..333457********9999886433..456788889999*******8855544459***********************95554 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd10017 | 4.62E-18 | 3 | 92 | No hit | No description |
SuperFamily | SSF101936 | 6.08E-14 | 4 | 92 | IPR015300 | DNA-binding pseudobarrel domain |
SMART | SM01019 | 0.0021 | 4 | 103 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 1.5E-16 | 4 | 93 | IPR015300 | DNA-binding pseudobarrel domain |
Pfam | PF02362 | 1.8E-10 | 5 | 92 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 121 aa Download sequence Send to blast |
MARFSKVLRK TDIKKRLSVP TGFLSSLPSF KGGGHAVDFQ AVDGSGRVWT FRCSIRRNGH 60 PKPVISRGWL AYVHSKSLKV GDKVQFLKEK NDAGAKMHAY EIRAEKEIKI FGAVFGYAPI 120 I |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC213428 | 1e-159 | AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011006364.1 | 1e-84 | PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700 | ||||
TrEMBL | A0A3N7FZQ5 | 7e-81 | A0A3N7FZQ5_POPTR; Uncharacterized protein | ||||
STRING | POPTR_0015s01750.1 | 6e-78 | (Populus trichocarpa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2060 | 7 | 78 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01500.1 | 8e-07 | B3 family protein |