PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

CCG019395.3

Organism

Populus euphratica

Taxonomic ID

75702

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus

Family

CPP

Protein Properties

Length: 864aa MW: 95820.1 Da PI: 6.1427

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
CCG019395.3	genome	LZU	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	48.2	2.2e-15	454	492	3	41
TCR 3 kkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 +++CnCkks+Clk+YCeCfaag +C ++C+Ce+C Nk e CCG019395.3 454 CRRCNCKKSRCLKLYCECFAAGIYCLDTCSCENCINKPE 492 789*********************************976 PP
2	TCR	40.6	5.3e-13	540	578	1	39
TCR 1 kekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNk 39 ++kkgCnCkkskC kkYCeCf+ g+ C C+Ce+C N CCG019395.3 540 RHKKGCNCKKSKCSKKYCECFQGGVGCCYGCRCEGCYNP 578 589**********************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM01114	1.7E-15	452	493	IPR033467	Tesmin/TSO1-like CXC domain
PROSITE profile	PS51634	32.74	453	580	IPR005172	CRC domain
Pfam	PF03638	2.4E-11	455	490	IPR005172	CRC domain
SMART	SM01114	4.8E-13	540	581	IPR033467	Tesmin/TSO1-like CXC domain
Pfam	PF03638	1.4E-8	542	577	IPR005172	CRC domain

Sequence ? help Back to Top
Protein Sequence Length: 864 aa Download sequence Send to blast
MKETPLISVI EDFNLYVVSE MPGSDIYRES DIQLKPQLMP CFQKEFQSYS SSGCVDEHLA 60 DPFKEDNIMN SSMSSLTSHK ETTTKADDTN AGNGKATVLM SDQTGEELPS VSMNFFYATA 120 REKEIERYGE FLQCLSGNVD DHVESDILGG TFFGEQHHEL FSPQNIELQA AGGQHDKLGA 180 SFQIFPEFLQ RDEACKYSKE SLGSLSKESV KEADQRHRGI RRHLHFGAAI SCNHAGNGTH 240 ETANLCLPAR QTDFENLVPP HVETRGISGI WQAGSCSQTA TLCSSFSPSA CESVRSAQNY 300 GNRALSACIP SGGDLHLNSF VRSESVGSEF STSMKLGSNP HQQEETLMSD RDHYLCKEID 360 GIPVLSFLGE IYSHLGYEQQ ESQAAAGAGS SSYQSSSIMQ TPCDSLHLIP YEQQASLCKG 420 TMPSSEYADI VEFSQMSPER NRKKAKYTIK SEGCRRCNCK KSRCLKLYCE CFAAGIYCLD 480 TCSCENCINK PEYEDTVLDM RQQTEARNPL AFAPKVVSNA TNSPANMMEE GKWMKTSSSR 540 HKKGCNCKKS KCSKKYCECF QGGVGCCYGC RCEGCYNPYG NKTAYKFGEN NVAIIKWSNA 600 FPQMLSRDIY GHFYIILTLK LSDLYSELSE SLKREQLLSL ATSLKPEISI SSQTIYRRAE 660 RWNNPSQEQL DTLESHNDCI KAERPNQFSS TWEELADIGQ LTPPSHCLLG AVASSGSLNI 720 RDCSKKFLGQ SQQESSVLSP SGYLNWHHSP SSLTPKLYGC EALPELSSDS FFCNMMEDAT 780 PETLKNTCTP STEGVKSSSP NQKWVSPPKI RSHELRSSSS QGLRSGWKFI MQDLPSFPSL 840 APYSKSQAAI HQNDGDRKGS TGYQ

Sequence ? help Back to Top

Protein Sequence Length: 864 aa Download sequence Send to blast

MKETPLISVI EDFNLYVVSE MPGSDIYRES DIQLKPQLMP CFQKEFQSYS SSGCVDEHLA  60
DPFKEDNIMN SSMSSLTSHK ETTTKADDTN AGNGKATVLM SDQTGEELPS VSMNFFYATA  120
REKEIERYGE FLQCLSGNVD DHVESDILGG TFFGEQHHEL FSPQNIELQA AGGQHDKLGA  180
SFQIFPEFLQ RDEACKYSKE SLGSLSKESV KEADQRHRGI RRHLHFGAAI SCNHAGNGTH  240
ETANLCLPAR QTDFENLVPP HVETRGISGI WQAGSCSQTA TLCSSFSPSA CESVRSAQNY  300
GNRALSACIP SGGDLHLNSF VRSESVGSEF STSMKLGSNP HQQEETLMSD RDHYLCKEID  360
GIPVLSFLGE IYSHLGYEQQ ESQAAAGAGS SSYQSSSIMQ TPCDSLHLIP YEQQASLCKG  420
TMPSSEYADI VEFSQMSPER NRKKAKYTIK SEGCRRCNCK KSRCLKLYCE CFAAGIYCLD  480
TCSCENCINK PEYEDTVLDM RQQTEARNPL AFAPKVVSNA TNSPANMMEE GKWMKTSSSR  540
HKKGCNCKKS KCSKKYCECF QGGVGCCYGC RCEGCYNPYG NKTAYKFGEN NVAIIKWSNA  600
FPQMLSRDIY GHFYIILTLK LSDLYSELSE SLKREQLLSL ATSLKPEISI SSQTIYRRAE  660
RWNNPSQEQL DTLESHNDCI KAERPNQFSS TWEELADIGQ LTPPSHCLLG AVASSGSLNI  720
RDCSKKFLGQ SQQESSVLSP SGYLNWHHSP SSLTPKLYGC EALPELSSDS FFCNMMEDAT  780
PETLKNTCTP STEGVKSSSP NQKWVSPPKI RSHELRSSSS QGLRSGWKFI MQDLPSFPSL  840
APYSKSQAAI HQNDGDRKGS TGYQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fd3_A	4e-13	457	577	14	120	Protein lin-54 homolog
5fd3_B	4e-13	457	577	14	120	Protein lin-54 homolog
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024462225.1	0.0	uncharacterized protein LOC7490966
TrEMBL	A0A3N7EFQ6	0.0	A0A3N7EFQ6_POPTR; Uncharacterized protein
STRING	POPTR_0001s17350.1	0.0	(Populus trichocarpa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14277	14	17

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22760.1	3e-30	Tesmin/TSO1-like CXC domain-containing protein