PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019346.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 504aa    MW: 56574.7 Da    PI: 4.488
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019346.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS134.89.2e-421335033374
         GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfshltaNq 100
                  +lL +  ea++ g+ ela+ ++  +se +sp+g++++ la+ + e L+++         k  +          +  aa+++f++++P+ +f+h++aN+
  CCG019346.1 133 HLLKAYGEAMDGGQSELADVIMRCVSEKVSPAGEALECLAFNLCEDLEKQGDY-----IKRES--------CRNFEAAFRAFYQIFPYGRFAHFAANS 217
                  788889999************************************99998665.....22222........445668999****************** PP

         GRAS 101 aIleavege.ervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg.....skeeleetgerLakfAeelgvpfefnvlvakrledlele 192
                  aIlea+  + e++Hi+Dfd+++G+QWp+L++aLa ++     +R+T+++ ++ +      + +  +t++rL + A+ +g++++ + +    +edl  e
  CCG019346.1 218 AILEAIPADaETIHIVDFDLGEGIQWPPLIEALAHQQ---KAVRLTAIKWKNDDcnwapMAWSFDATKRRLLDHARYFGLNLKVEEM---GIEDLANE 309
                  ******88879***********************975...56********88889999888999*********************98...55555555 PP

         GRAS 193 eLrvkp....gEalaVnlvlqlhrlldesvsleserdevLklvkslsPk..........vvvvveqe..adh.nsesFlerflealeyysalfdslea 273
                  e + ++    +E l+ n++l+l ++   ++ +++  +++L++ k+l ++          ++++ + +   ++ ns +F   f   l +y al+ds+e+
  CCG019346.1 310 EKKANKrggrKEWLVFNSMLRLPHMG--RARSRQLVEQFLRVAKDLLANsafcnsssrgLITFGDGDscENLkNSFDFGSFFEGHLLHYKALLDSIES 405
                  5444444566***************8..4555555789***9999966533333334447888888853344788899999999************** PP

         GRAS 274 klpres.eerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk.sdgyrve.eesgslvlgWkdrpLv 368
                  k+p +  e+r+ +E  ++++ i++      ++  ++  + ++  +     GF+  ++s  + ++a+ ++   + s g ++  +  ++++l Wk+ pLv
  CCG019346.1 406 KFPVHLtEARMALECLFVAPYISSQ-----DWY-QKWVEIKQGCNLELGNGFEGWRVSRVNLEEAREMVGDKQsSYGVKIGgDLGNEMILEWKSTPLV 497
                  **98876999999999988888653.....332.3333455555555668*********************996777777756699999********* PP

         GRAS 369 svSaWr 374
                   vS Wr
  CCG019346.1 498 RVSTWR 503
                  *****8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098522.937105481IPR005202Transcription factor GRAS
PfamPF035143.2E-39133503IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 504 aa     Download sequence    Send to blast
MDAYVDACQF SSSFANNEGI YDISSMFPAV FNGDQSVQSP ASSDDFQVQV PCVEDFLMEG  60
FEPNLIKEME LIFCESEGNS SSQELSSEGE NVGSPSPSIK SSEASMDTTP IPRSTLELPG  120
EELQLENQAS LFHLLKAYGE AMDGGQSELA DVIMRCVSEK VSPAGEALEC LAFNLCEDLE  180
KQGDYIKRES CRNFEAAFRA FYQIFPYGRF AHFAANSAIL EAIPADAETI HIVDFDLGEG  240
IQWPPLIEAL AHQQKAVRLT AIKWKNDDCN WAPMAWSFDA TKRRLLDHAR YFGLNLKVEE  300
MGIEDLANEE KKANKRGGRK EWLVFNSMLR LPHMGRARSR QLVEQFLRVA KDLLANSAFC  360
NSSSRGLITF GDGDSCENLK NSFDFGSFFE GHLLHYKALL DSIESKFPVH LTEARMALEC  420
LFVAPYISSQ DWYQKWVEIK QGCNLELGNG FEGWRVSRVN LEEAREMVGD KQSSYGVKIG  480
GDLGNEMILE WKSTPLVRVS TWRN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A2e-1614150316375GRAS family transcription factor containing protein, expressed
Search in ModeBase
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2165440.0AC216544.1 Populus trichocarpa clone POP016-D10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011046829.10.0PREDICTED: nodulation-signaling pathway 2 protein-like
TrEMBLA0A2K1XEP90.0A0A2K1XEP9_POPTR; Uncharacterized protein
STRINGPOPTR_0016s13050.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF42742761
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G08250.17e-20GRAS family protein