PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID CCG019201.1
Organism
Populus euphratica
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HSF
Protein Properties Length: 737aa    MW: 81181.1 Da    PI: 7.5696
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
CCG019201.1genomeLZUView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind109.62.3e-34221122101
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl k+y++++d++++e++sws+n+nsfvv+++ efa+ +Lp++Fkh+nf+SF+RQLn+YgF+k++ e+         weF+++ F k++k+ll++i+
   CCG019201.1  22 FLVKTYDMVDDSSTDEIVSWSSNKNSFVVWNPPEFARLLLPTFFKHNNFSSFIRQLNTYGFRKIDPER---------WEFANEDFVKDQKHLLKNIH 109
                   9****************************************************************999.........******************** PP

                   XXX CS
  HSF_DNA-bind  99 rkk 101
                   r+k
   CCG019201.1 110 RRK 112
                   *98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.9E-3718111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004152.3E-6018111IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467853.13E-3518111IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000563.7E-182245IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004473.1E-3022111IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-186072IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406185IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000563.7E-187385IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF821533.01E-30530681IPR000782FAS1 domain
PROSITE profilePS5021322.639536678IPR000782FAS1 domain
Gene3DG3DSA:2.30.180.109.5E-21537681IPR000782FAS1 domain
PfamPF024699.9E-24548680IPR000782FAS1 domain
SMARTSM005543.0E-22577681IPR000782FAS1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 737 aa     Download sequence    Send to blast
MEAGPSSATT GGGGGGGGPA PFLVKTYDMV DDSSTDEIVS WSSNKNSFVV WNPPEFARLL  60
LPTFFKHNNF SSFIRQLNTY GFRKIDPERW EFANEDFVKD QKHLLKNIHR RKPIHSHSQP  120
QGSLVDPERA AYEEEIEKLA RDKAKLKASI LRFEQQRSSA KLQVEDLTQK IDTMQQRQEK  180
LLSFLEKAVQ NPTFVEHLAR KIEAMDFSAY SKKRRLPQVD HPMPIAENSL VENHSSSRPE  240
SNVIHQDFPD KLRLELSPAV SDSNLVSHST QSSNEDGGSP QRKISEGNPK DALTRTSGLL  300
LAPETLELSD TGASYAFKVN PAVPKDIPAN GSPALHSLQS NLISNEEVDG HISCQLNLSL  360
ASSPLQVNKN PYLTRIPQLG QEIGKSPESR FNESNKDSDI RASQNNINLG NEGRVLSSSQ  420
ETPSNNQAPP SAPVRVNDVF WEQFLTERPG YSDNEEASSN YRANPYDERE RRIGFGAPRN  480
AKNMEQLSLS PLLVNNIEKM ERLQHLLISL YLLILSINLT TTTAQSPAPA PAPPGPTNVI  540
KILKKAGHFK TFIRLLKSTQ LDSNLNSQLG NTNNGLTIFA PSDSAFSALK TGTLRTLTDQ  600
EKVELMQFHI VPMFISSSQF DTVSSPLKTH AGSGARFQLN VTASGNSLNI STGLTNTTIS  660
DTVYTDTNLA IYQVDKVLLP LDIFTPKPPP PAPAPAPKLK AESESPDDGV SKKDISSAKK  720
PRNHVIRTAC PGFGPRS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-211311117129Heat shock factor protein 1
5d5v_B2e-211311117129Heat shock factor protein 1
5d5v_D2e-211311117129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKP0139840.0KP013984.1 Populus simonii heat shock transcription factor A5b (HsfA5b) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011003631.10.0PREDICTED: heat stress transcription factor A-5-like
SwissprotQ94BZ51e-173HSFA5_ARATH; Heat stress transcription factor A-5
TrEMBLB9GFJ00.0B9GFJ0_POPTR; Uncharacterized protein
STRINGPOPTR_0001s32810.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF49613253
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13980.11e-174HSF family protein
Publications ? help Back to Top
  1. Reňák D,Gibalová A,Solcová K,Honys D
    A new link between stress response and nucleolar function during pollen development in Arabidopsis mediated by AtREN1 protein.
    Plant Cell Environ., 2014. 37(3): p. 670-83
    [PMID:23961845]